| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,666 | G→A | intergenic (‑5444/‑3153) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,666 | 0 | G | A | 78.1% | 2340.4 / inf | 2063 | intergenic (‑5444/‑3153) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (218/231); new base A (829/777); total (1053/1010) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.70e-04 | |||||||||||
Only 100 of 2069 total aligned reads displayed.
CGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAG > CP009974/1897516‑1897814 | ctgATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGGCGCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAAcc < 2:2178433/149‑1 (MQ=25) cAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAcc < 2:2939963/151‑1 (MQ=12) cAGATGCATGGAAGTGCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAcc < 2:4612221/151‑1 (MQ=17) tgATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAAccg > 2:768231/2‑150 (MQ=17) aGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCTACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAAccg < 2:1358454/151‑2 (MQ=21) aGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAAccg > 2:4143595/1‑150 (MQ=12) gCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGTACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt > 1:3940295/1‑151 (MQ=9) gCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt > 2:3755441/1‑151 (MQ=9) cgtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCAACCtt < 1:575343/149‑1 (MQ=9) gtGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTc > 2:4988022/2‑151 (MQ=18) aTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTc < 1:4199304/151‑1 (MQ=9) ggAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCAc > 1:1817920/1‑151 (MQ=18) gAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCAcc > 1:2806207/1‑151 (MQ=9) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCAcc > 1:2993800/1‑151 (MQ=18) gAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCCCCAcc > 2:1268089/1‑151 (MQ=18) aaGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCActg > 2:1713721/1‑149 (MQ=9) agttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGt < 1:369291‑M2/108‑1 (MQ=255) agttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGt < 1:4731440‑M2/108‑1 (MQ=255) aGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGt < 1:156287/151‑1 (MQ=9) gTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACtgtg > 1:4303761/1‑151 (MQ=9) tCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCa > 1:2124048/1‑151 (MQ=18) tCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCa > 1:1269035/1‑151 (MQ=17) cGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCAc < 1:4892995/151‑1 (MQ=2) cGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCAc < 1:1654088/151‑1 (MQ=2) aaaaCCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGt > 2:3315159/1‑151 (MQ=2) aaaaCCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGt < 2:2245707/151‑1 (MQ=18) aaaCCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTc > 1:1461423/1‑151 (MQ=2) aaaCCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTc > 1:3528874/1‑151 (MQ=17) aacctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCa < 2:1841380/151‑1 (MQ=11) acctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCaa > 2:5218391/1‑151 (MQ=17) acctgaacctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCaa < 2:4721548/151‑1 (MQ=17) cctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAAc < 2:3931211/151‑1 (MQ=17) cctgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAAc < 1:269901/151‑1 (MQ=2) ctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAAcc < 2:352123/151‑1 (MQ=17) tgaacctgGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCa > 1:1191354/1‑151 (MQ=2) tgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGCACGTCAAACCGACCTTCACCGTGCACGTCAACCa > 1:968566/1‑151 (MQ=17) tgaacctgGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCa < 1:4797196/151‑1 (MQ=14) aacctgGACAAGCCCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGc < 1:380027/151‑1 (MQ=14) ccctgGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:1445442/150‑1 (MQ=18) cctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGTTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCTTGCACGTCAACCAGCCg > 2:3856325/1‑151 (MQ=17) ctgGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGc < 1:762351/151‑1 (MQ=14) cAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGcc > 1:2573011/1‑151 (MQ=14) aaGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGccc < 1:175756/151‑1 (MQ=17) gaccccggTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCAc < 1:5001370/144‑1 (MQ=17) cTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGa < 2:2567006/151‑1 (MQ=14) cccggTCAGCACCGAGGTGACCGCCGAGCCAGGCACCCCGGGCAACGAAGGCGATCTCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAc < 1:3074457/147‑1 (MQ=14) cccAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAc < 2:2689540/150‑1 (MQ=14) ccggTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGAcc < 1:5103453/148‑1 (MQ=17) ccgTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCt > 1:203191/3‑151 (MQ=14) cgTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTg < 1:1385371/150‑1 (MQ=14) cAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATc < 2:3596630/151‑1 (MQ=14) aGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCg > 2:1058831/1‑151 (MQ=11) gCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGt > 1:4521766/1‑151 (MQ=14) aCCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGa < 1:2258319/151‑1 (MQ=11) cGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAcc > 2:4901120/1‑151 (MQ=11) cgTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTg < 2:1537913/150‑1 (MQ=11) gTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGa > 1:4108336/1‑151 (MQ=11) gTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGa > 2:1924548/1‑151 (MQ=14) tGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg < 2:3236300/151‑1 (MQ=14) gACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGc > 1:2198532/1‑151 (MQ=11) gACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGc > 1:5166803/1‑151 (MQ=11) caCCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGc > 1:3245200/2‑151 (MQ=17) actgacgaGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGca > 1:1093591/4‑151 (MQ=17) gacgaGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGcaaca < 2:2356874/151‑1 (MQ=17) aGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGc > 2:900633/1‑151 (MQ=11) gCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGcc < 2:5108436/151‑1 (MQ=11) ccAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGctc < 1:1015926/151‑3 (MQ=14) accccGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTcc > 2:4428262/4‑150 (MQ=17) cccGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCAcc < 2:1147137/150‑1 (MQ=255) cccGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCAcc < 2:666028/150‑1 (MQ=14) cccGGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGCCCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCAcc < 2:3026361/150‑1 (MQ=11) ccGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCa > 2:3368944/1‑151 (MQ=14) ggCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCa > 1:2450413/1‑151 (MQ=255) cAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAg > 2:4548172/1‑151 (MQ=14) aaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAgg > 1:3363750/1‑151 (MQ=11) aaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAgg > 1:3861729/1‑151 (MQ=14) aCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACCACGCCCAGGTCACCATCAAGGc > 2:2756932/1‑151 (MQ=255) aCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGc < 1:3423431/151‑1 (MQ=11) gAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCg > 2:4806837/1‑151 (MQ=11) aaGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTgg > 1:3137059/1‑151 (MQ=255) aaGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGCCCCTGAGCAACAATGCACAGGTCCCCATCAAGGCTgg > 2:433786/1‑151 (MQ=11) aGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGt > 2:84870/1‑151 (MQ=11) aGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTggc < 1:4389662/151‑2 (MQ=11) ggCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTggcg > 2:425115/1‑149 (MQ=11) tatCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAAcc < 1:3600774/151‑1 (MQ=14) tatCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGa > 2:4033181/1‑147 (MQ=255) atcatcAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCa < 2:284432/151‑1 (MQ=14) ggTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCg > 2:2058689/1‑151 (MQ=14) ggTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCg > 1:881190/1‑151 (MQ=14) gTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGt < 1:1926498/151‑1 (MQ=14) tCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTa > 2:2464255/1‑151 (MQ=11) aCCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTaca < 2:601124/151‑1 (MQ=255) tCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCa < 1:4607029/151‑1 (MQ=11) ggCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTGGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGTGCGCCGTACACCCacgcg > 2:3112065/1‑149 (MQ=11) gACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGcac < 1:2345393/151‑1 (MQ=14) cAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGcgcaag < 1:667713/151‑3 (MQ=11) cttCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGa > 2:1625831/3‑151 (MQ=11) gaACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTAcaac > 2:3446055/1‑148 (MQ=11) aCGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTAcaacga > 1:2911131/1‑146 (MQ=11) aaGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGATGcgg > 1:4029842/1‑149 (MQ=11) | CGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTACCAGGACGCAG > CP009974/1897516‑1897814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |