| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,247,115 | 2 bp→T | intergenic (‑249/‑561) | RPPX_05495 ← / → RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,247,115 | 0 | A | . | 98.2% | 776.9 / 10.4 | 166 | intergenic (‑249/‑562) | RPPX_05495/RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base . (82/79); minor base T (3/0); total (86/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
| * | CP009974 | 1,247,116 | 0 | G | T | 97.6% | 585.4 / ‑3.3 | 166 | intergenic (‑250/‑561) | RPPX_05495/RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base T (82/78); total (86/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 166 total aligned reads displayed.
TTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGA > CP009974/1246970‑1247255 | tCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGCCGGGCATGGATGCCCGTCAACCGCTG‑TGCCCCAg > 2:2866659/1‑151 (MQ=18) cGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAgg < 1:3634734/151‑1 (MQ=255) cGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAgg > 2:3937783/1‑151 (MQ=255) gTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGa > 2:763854/1‑151 (MQ=255) tAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGAt > 1:2398740/1‑151 (MQ=255) ccTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATggg > 1:332904/1‑151 (MQ=255) ccTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATggg < 1:148178/151‑1 (MQ=255) tGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGc < 2:2355590/151‑1 (MQ=255) cccTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGccc > 1:3751500/1‑150 (MQ=255) tAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGACATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCa > 1:2077086/1‑151 (MQ=17) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg > 1:1032448/1‑151 (MQ=255) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg > 2:3371344/1‑151 (MQ=255) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg > 2:4514369/1‑151 (MQ=255) tgtTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCgg < 1:2256376/151‑1 (MQ=255) gtTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGt < 1:2056346/151‑1 (MQ=255) gtTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGt > 1:5017187/1‑151 (MQ=255) ttttCAGGTCTTGCCGGCTTTTGATCTGGCTCTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAATGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtc < 2:4102550/151‑1 (MQ=17) tttCGGGGCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGGCCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcc < 2:3208932/151‑1 (MQ=14) tttCAGGTGTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGGACGCAGGCCTTGCGCAGGGAGGTGGCGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcc < 2:1533923/151‑1 (MQ=14) cAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc < 1:891136/151‑1 (MQ=255) aGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc < 2:2073565/151‑1 (MQ=255) aGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc < 1:5204657/151‑1 (MQ=255) gggcTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCGTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCg < 2:3523363/148‑1 (MQ=14) gTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg > 1:197551/1‑151 (MQ=255) gTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg < 2:3881247/151‑1 (MQ=255) tGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGc > 1:164958/1‑151 (MQ=255) tGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGc < 1:4996760/151‑1 (MQ=255) ccGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCaa < 1:1191456/151‑1 (MQ=255) ccGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCaa < 1:1810961/151‑1 (MQ=255) cGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGCCTTCAGGAGGCCGCACGCAGGCCTTGCGCAGGGAGGCGACGGGCATGGCTGCCCCTCCACCGCT‑CCGCCCCAGGATGGGGCCTGCAGCGCGGTCCCCCCCGGAGcccc > 2:4788500/1‑148 (MQ=18) ggCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGc < 1:1775397/151‑1 (MQ=255) ggCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGc > 1:173246/1‑151 (MQ=255) ggCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGc > 1:2472344/1‑151 (MQ=255) gCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGcc < 1:3596165/151‑1 (MQ=255) cTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc < 2:816003/151‑1 (MQ=255) tttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTa < 2:4810450/151‑1 (MQ=255) ttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTAc < 2:2215388/151‑1 (MQ=255) tGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACg < 2:2692162/151‑1 (MQ=255) aTCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGcn < 1:1830080/151‑2 (MQ=255) aTCTGGCTTTTGATCCTGACCTTGAGCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCt < 2:1077846/151‑1 (MQ=255) cTGGCTTTTGATCCTTACCTTGATCTTCGCGACGTCAGGAGGCCGCACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCg < 2:4034241/151‑1 (MQ=17) tGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCCCgg > 1:2509322/1‑151 (MQ=14) ggCTTTTGATCCTGCCCTTGATCTTCGCGACTTCAGGAGGCCGAACGAAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCGAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGc < 1:2175876/151‑1 (MQ=17) gCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGcc > 2:4507310/1‑151 (MQ=255) cTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCGCGGATGGGGCCCGCAGCGCGGTACTCCCCGCAGCGAACCCTACGCACGGcat > 2:2667225/1‑149 (MQ=14) ttttGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGcctc < 2:4934295/151‑1 (MQ=255) ttGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGcctcct < 1:1319025/151‑1 (MQ=255) tGATGCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGGCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTg < 2:4438785/151‑1 (MQ=17) gATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGa > 1:3165180/1‑151 (MQ=255) tCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAg < 1:502705/151‑1 (MQ=255) cTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAAt < 1:3524230/151‑1 (MQ=255) tGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCt > 2:3677755/1‑151 (MQ=255) tGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCt < 1:3563108/151‑1 (MQ=255) gATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTg > 1:413087/1‑151 (MQ=255) aTCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGc > 2:1886203/1‑151 (MQ=255) cTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAg < 1:3786706/151‑1 (MQ=255) tCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAgcg > 1:949291/1‑151 (MQ=255) ttCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCGGGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGACCTCTCGGGAGCAAGTCCTACGCTCGGCCTCCTGTACTCGTAATCTGCAGTGCGTGATc > 2:1727440/1‑151 (MQ=17) ttCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATc < 1:2762402/151‑1 (MQ=255) ttCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATc > 2:5187614/1‑151 (MQ=255) cAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCGGATCaa > 1:2948492/1‑151 (MQ=18) aggaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCGCCTGAAGGCTCAATCTGCAGCGCCTGATCAAc > 2:529529/1‑151 (MQ=18) gaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcg > 2:4593461/1‑151 (MQ=255) aggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcgc < 2:164958/151‑1 (MQ=255) gCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcg < 1:5193625/148‑1 (MQ=255) gCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGACCAACcgcgc > 1:4294939/1‑151 (MQ=21) cGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCgcgcgc > 1:3457044/1‑151 (MQ=255) gAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCt > 1:2878461/1‑151 (MQ=255) gCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGa < 1:3239081/151‑1 (MQ=255) aGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAg > 2:4175944/1‑151 (MQ=255) aGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAg > 1:1770434/1‑151 (MQ=255) aGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAg > 2:4175919/1‑151 (MQ=255) ggCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGc < 1:2609166/151‑1 (MQ=255) gCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCg > 1:4461697/1‑151 (MQ=255) ccTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGa < 1:323678/151‑1 (MQ=255) ttGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACa < 1:1796374/151‑1 (MQ=255) ttGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACa > 1:2602133/1‑151 (MQ=255) ttGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCACTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACa > 2:4998995/1‑151 (MQ=21) gcgcAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGAGACAGt > 1:2293499/1‑151 (MQ=255) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAaga > 2:3395270/1‑151 (MQ=255) gggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAagag > 2:315004/1‑151 (MQ=255) gTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCaaaa > 2:838332/1‑151 (MQ=255) tGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAg < 2:1976593/151‑1 (MQ=255) gACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGc > 1:1203308/1‑151 (MQ=255) gACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTCAGAAGCGACAGTAACAGCAAAAGc > 2:4995929/1‑151 (MQ=255) gggCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGAAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCag < 2:1268460/151‑1 (MQ=255) gacATAGATGCCCGCTGAGCGCTG‑TGCCCCAGGCTAGGGCCTGCAGCGCGGTCCACCTGGCAGCAAGCCGTACGCTCGGCCTCCTGAACTCGCAATCTGCCGCGCCTGATCCACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCaga < 2:595933/149‑1 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 1:2429872/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 1:3696099/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 2:2253137/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 2:3271315/1‑151 (MQ=255) tGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCa < 2:1623879/151‑1 (MQ=255) ggATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCAt > 1:4571835/1‑151 (MQ=255) gATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATc < 2:1138656/151‑1 (MQ=255) aTGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCg < 1:160937/151‑1 (MQ=255) gCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGc > 1:723055/1‑151 (MQ=255) cccGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCt < 2:1402986/151‑1 (MQ=255) cccGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCt < 2:1403382/151‑1 (MQ=255) cccGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCCCGCGCTTAGAACCGACAGGAAGAGCAACAGCCAGAGCCACCGGca > 2:3597473/1‑150 (MQ=37) gTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCgc > 2:957668/1‑150 (MQ=255) | TTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGA > CP009974/1246970‑1247255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |