| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,492,467 | (T)5→4 | coding (124/2574 nt) | RPPX_15570 ← | DNA mismatch repair protein MutS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,492,463 | 0 | T | . | 99.6% | 1454.5 / ‑3.6 | 275 | coding (128/2574 nt) | RPPX_15570 | DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (137/137); minor base C (0/1); total (137/138) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 294 total aligned reads displayed.
ATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCTTACAGGGGGG > CP009974/3492313‑3492609 | cTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCCttttcg < 2:2746199/151‑3 (MQ=255) cacaGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCCttttcgcc > 2:2867047/1‑147 (MQ=255) aGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCt < 2:3178949/151‑1 (MQ=255) gATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCtt > 2:3649737/1‑151 (MQ=255) aTCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTc < 2:4961383/151‑1 (MQ=255) aTCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATACCCAGCAGTTTCGCGGCC‑CTTTCGCATCCTc > 2:5256205/1‑151 (MQ=255) caccacCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGt > 1:1847897/1‑151 (MQ=255) caccacCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGt < 2:1792427/151‑1 (MQ=255) ctcGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTagaa < 1:5248366/149‑1 (MQ=255) accGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTagaa < 1:956694/151‑1 (MQ=255) accGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTagaa > 2:5490735/1‑151 (MQ=255) gACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGAt > 2:1222115/1‑151 (MQ=255) cGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCg < 1:4818466/151‑1 (MQ=255) gCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGt < 1:3866425/151‑1 (MQ=255) ccGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTa > 2:4703413/1‑151 (MQ=255) cgggCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAg < 2:1933998/148‑1 (MQ=255) gACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGc < 1:2637790/151‑1 (MQ=255) ccAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGccc > 2:4297163/1‑151 (MQ=255) ttGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCg > 2:2051041/1‑151 (MQ=255) ggCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGt > 1:2944348/1‑151 (MQ=255) gCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTa < 1:2240287/151‑1 (MQ=255) gCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑CTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTa < 1:5610418/151‑1 (MQ=255) cAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGa < 2:3433376/151‑1 (MQ=255) cAGGTAGCCGTGCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGa < 2:3498976/151‑1 (MQ=255) aGCCTTCCGGCGAATGGAAAGGAACCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATc < 2:739518/151‑1 (MQ=255) aGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATc > 1:695322/1‑151 (MQ=255) aGCCGTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACGGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATc < 2:5755435/151‑1 (MQ=255) gCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCa < 2:6236673/151‑1 (MQ=255) gCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCa > 1:1191540/1‑151 (MQ=255) cTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGc > 1:2881906/1‑151 (MQ=255) cTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGc > 1:1600944/1‑151 (MQ=255) ccAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTgg > 2:1681202/1‑151 (MQ=255) cAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTATAACATCAGATGGt > 2:331992/1‑151 (MQ=255) cAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGt < 2:6421401/151‑1 (MQ=255) aGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTc < 1:6055928/151‑1 (MQ=255) gAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg < 1:2556905/151‑1 (MQ=255) gtGGAGAGGGAGCCCGCGCATGGGGATGGACTGGCCGGCCGGCGGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAGGATCTCGTAGAAGTGGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 2:2755093/150‑1 (MQ=255) aTGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 1:4575123/151‑1 (MQ=255) aTGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt > 1:244721/1‑151 (MQ=255) tGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCAGGCGGTAGAACATCAGCTGGTCCGGGTg > 1:3932074/1‑151 (MQ=255) gggAAAGGACTCCCGGACGTGGGGATGGACTGGCCGGCCGACGGACCGCGGGCGGTCAGCGTGATAGCCTGCAGTTGCGCGGCC‑TTTTCGCATGTTCGTAGAAGATCTCGTAGAAGTCGCTCATGCGGTAGCACATCAGCTGGGCCGGGTg < 2:3904177/150‑1 (MQ=255) ggAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGc > 1:6388628/1‑151 (MQ=255) ggAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGc > 2:1119230/1‑151 (MQ=255) ggAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGc > 1:1346006/1‑151 (MQ=255) gAAAGGGAGCCGGAACATGGGGGACGACTGGCCTGCCGAGGGACCGCGGGCGGTCAGCGTGGTATCCAGCAGTTTCGCGGCC‑TTGTCGCATCTTCGTAGAAGAGCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCt < 2:4923229/151‑1 (MQ=255) aGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGt < 1:4975300/151‑1 (MQ=255) cccGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa < 2:2441195/151‑1 (MQ=255) acaTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGGTCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCCGGTTTTTCAGCTTc > 2:4939051/1‑151 (MQ=255) caTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGTTAGAAAATCTGCTGGTCCGGTTGCTGGTTTTTCAGCTTcc > 2:6192648/1‑151 (MQ=255) caTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTcc < 2:593323/151‑1 (MQ=255) aTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 1:200646/151‑1 (MQ=255) ggggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGt < 1:6464699/151‑1 (MQ=255) ggggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGt < 2:46094/151‑1 (MQ=255) gggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTa > 2:2369419/1‑151 (MQ=255) ggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTAc < 1:1295717/151‑1 (MQ=255) ggACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGCTCTCGTAGAAGTCGCCCAGTCGGTAGAACATCAACTGGTCCGTGCGCTGATCTTTCAGCTTCCAGTActgct > 2:4514292/1‑151 (MQ=255) ggACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCCGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTActgct > 1:3559205/1‑151 (MQ=255) aCTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACtgctgc < 2:1346108/151‑1 (MQ=255) cgggccggccGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGca < 2:1376280/149‑1 (MQ=255) cTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGca < 1:5157235/151‑1 (MQ=255) ggccggccGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGcatc < 2:2487559/151‑1 (MQ=255) cggccgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCatcatc < 1:3503289/151‑1 (MQ=255) cggccgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCatcatc < 1:3888004/151‑1 (MQ=255) ggccgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCg < 2:602266/151‑1 (MQ=255) ggccgACTGACCGCGGGCGGTCAGCGTGATATCAAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGAACTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCg > 2:3533694/1‑151 (MQ=255) ccgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCggg < 1:3767740/151‑1 (MQ=255) ccgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGGGCTGGTGTTTCGGCTTCCCGTCCTGCTGCATCATCggg > 2:1529698/1‑151 (MQ=255) cgACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCgggg > 2:1862999/1‑151 (MQ=255) gACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCggggg > 1:4218941/1‑150 (MQ=255) gACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTCTTCAGATTCCAGTACTGCTGCATCATCGGGgt > 2:1430871/1‑151 (MQ=255) cTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgt < 2:6331854/151‑1 (MQ=255) cTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgt > 2:1229224/1‑151 (MQ=255) tGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgtg < 2:2709615/151‑1 (MQ=255) tGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgtg < 1:5515869/151‑1 (MQ=255) tGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGCTTTTCAGCTTCCAGTACTGCTGCATCCTCGCGgtgtg > 1:3644495/1‑151 (MQ=255) gACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgtgt < 2:5227134/151‑1 (MQ=255) ccGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGc < 1:1011940/151‑1 (MQ=255) cgcgGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCg > 1:1784519/1‑151 (MQ=255) ggggcggTGAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCGTCTTCGTAGAAGAGCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGa < 2:5107275/150‑1 (MQ=255) cgggcggTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGGGTGTGCGGa > 1:5798414/1‑151 (MQ=255) cggcccgTCGGCGTCCTATCCAACAGTTTCGCCGCC‑TTTTCGCCTCTTCGTAGAAGATCTCGTACAAGCCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGAGGTGTGTGCGGa < 2:2235680/145‑1 (MQ=255) gggcggTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGaa > 1:414154/1‑151 (MQ=255) gggcggTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGaa < 1:4680272/151‑1 (MQ=255) ggTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGAt > 1:748688/1‑151 (MQ=255) gTCAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATc > 2:822014/1‑151 (MQ=255) cAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCCTCATCGGGGTGTGTGCGGAAAGATCTg > 2:3702587/1‑151 (MQ=255) cAGCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTg > 1:5073358/1‑151 (MQ=255) gCGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCCGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGCGTGCGTGCGGAAAGATCTGAc > 1:6303445/1‑151 (MQ=255) cGTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACa > 1:155121/1‑151 (MQ=255) gTGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACAt > 1:545366/1‑151 (MQ=255) tGATATCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACAtt > 1:4193899/1‑151 (MQ=255) atatCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCa > 1:488870/1‑151 (MQ=255) atatCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCa < 2:2298799/151‑1 (MQ=255) tatCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAg < 2:3270290/151‑1 (MQ=255) tatCCAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAg < 1:4076070/151‑1 (MQ=255) ccAGCAGTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGc < 1:5763038/151‑1 (MQ=255) gcagTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCtt > 1:3420415/1‑151 (MQ=255) gcagTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCtt < 1:2328355/151‑1 (MQ=255) cagTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCGCGTAGAAGTCGCCCACGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCTTa < 2:4089512/151‑1 (MQ=255) agTTTCGCGGCC‑TTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCTTAc < 2:5679445/151‑1 (MQ=255) | ATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAAAGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGCGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCGGAAAGATCTGACATTCAGGGCCTTACAGGGGGG > CP009974/3492313‑3492609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |