| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 4,165,118 | Δ1 bp | intergenic (‑312/‑163) | RPPX_18525 ← / → RPPX_18530 | transporter/16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 4,165,116 | 0 | A | . | 85.2% | 85.1 / 38.8 | 55 | intergenic (‑310/‑165) | RPPX_18525/RPPX_18530 | transporter/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (2/6); new base . (22/24); total (25/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
AACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATA > CP009974/4164966‑4165225 | aaCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCa > 1:1676768/1‑151 (MQ=255)aaCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCa > 1:2327550/1‑151 (MQ=255) cgcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaac > 1:1091085/1‑150 (MQ=255) cgcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaac < 1:752658/151‑2 (MQ=255) cgcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaac < 1:5211118/151‑2 (MQ=255) gcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacg < 1:3229882/151‑3 (MQ=255) cgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgc > 2:3570111/1‑148 (MQ=255) ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct < 2:2354733/151‑5 (MQ=17) ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:6261453/1‑147 (MQ=17) ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:1289011/1‑147 (MQ=17) ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct < 2:5053099/151‑5 (MQ=17) gTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctc < 2:6300770/151‑1 (MQ=17) tAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctct > 2:2112830/1‑151 (MQ=14) tAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctct < 2:3718356/151‑1 (MQ=14) tAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctct < 1:3619515/151‑1 (MQ=14) tAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctct < 1:3620521/151‑1 (MQ=14) aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt > 1:2140977/1‑151 (MQ=14) aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt < 2:1108943/151‑1 (MQ=14) aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTAACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt < 2:5787841/151‑1 (MQ=14) aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTAACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt < 2:5786667/151‑1 (MQ=14) gCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGCTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCCCttt > 2:4140202/1‑151 (MQ=14) gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTaa > 1:4019734/1‑151 (MQ=14) gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTaa < 2:2662073/151‑1 (MQ=255) gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTaa < 2:1733914/151‑1 (MQ=14) gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTaa > 1:6466818/1‑151 (MQ=14) gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAA‑CTAACGCTCTTTaa > 2:4863664/1‑151 (MQ=14) aaGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAc > 1:3077256/1‑151 (MQ=14) aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAACGCTCTTAACC‑AACGCTCTTTAACa > 2:3730260/1‑151 (MQ=255) aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACa < 2:3309628/151‑1 (MQ=14) gCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaa < 1:6307550/151‑1 (MQ=14) gCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaa > 1:4853005/1‑151 (MQ=14) cAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaaa < 1:311594/151‑1 (MQ=14) cAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaaa < 1:4046958/151‑1 (MQ=14) aaaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAAt < 2:1138791/151‑1 (MQ=14) aaGCTAGCCAGTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGGAAAAAACTTCAAACTAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATc < 2:6262520/151‑1 (MQ=11) aaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATc < 2:5706168/151‑1 (MQ=14) aGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCg > 1:400325/1‑151 (MQ=14) gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 2:6095703/151‑1 (MQ=11) gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa > 1:5568717/1‑151 (MQ=11) cTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGaa < 1:4672177/151‑1 (MQ=11) cTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGaa > 2:4307794/1‑151 (MQ=11) cTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGaa < 1:1734912/151‑1 (MQ=11) tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt > 2:4933794/1‑151 (MQ=255) tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt < 1:866501/151‑1 (MQ=11) tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt > 2:4911960/1‑151 (MQ=11) aGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATc > 2:2362569/1‑151 (MQ=255) gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCa > 2:1285509/1‑151 (MQ=11) gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCa > 2:4137501/1‑151 (MQ=255) cACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAg > 2:964837/1‑151 (MQ=11) cACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTATTTAACAAATCGAATCAAg < 1:4832519/151‑1 (MQ=11) aCTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGc > 2:5430279/1‑151 (MQ=11) cTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCa > 2:1885660/1‑151 (MQ=11) cTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCa < 1:1678893/151‑1 (MQ=11) cTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCa > 1:2477499/1‑151 (MQ=11) cTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCa > 1:385376/1‑151 (MQ=11) tGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCaa < 1:673263/151‑1 (MQ=11) gTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAt < 1:3455429/151‑1 (MQ=11) tATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAtt > 2:1581916/1‑151 (MQ=1) aagcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAAt < 1:3455955/147‑1 (MQ=1) aagcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAAt < 2:4008362/147‑1 (MQ=1) agcgAGTTAAGTGACTGACGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAAtt < 2:4474466/148‑1 (MQ=11) agcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAAtt < 2:5863419/148‑1 (MQ=11) gAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCACGCAATTCgt > 1:6420120/1‑151 (MQ=11) gAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCgt > 1:2415104/1‑151 (MQ=255) aagcGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACg < 1:1902795/148‑1 (MQ=1) cggaGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATcacaga < 1:1253916/148‑3 (MQ=1) | AACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATA > CP009974/4164966‑4165225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |