| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,602,532 | Δ1 bp | coding (258/2253 nt) | RPPX_24935 → | isoquinoline 1‑oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,602,530 | 0 | G | . | 98.4% | 1587.3 / 12.8 | 308 | coding (256/2253 nt) | RPPX_24935 | isoquinoline 1‑oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base . (148/154); total (151/157) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 317 total aligned reads displayed.
TGGTGCTAGGTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGCGGGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCATGTCG > CP009974/5602381‑5602676 | tGGTGCTAGGTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGCgg > 2:5959130/1‑151 (MQ=255) tAGGTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGc > 2:1900223/1‑151 (MQ=255) ggTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGccc < 2:3544229/151‑1 (MQ=255) gTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCg < 2:4478984/151‑1 (MQ=255) tttCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAGGGC‑GGCAAGGCCCGt < 1:4934811/151‑1 (MQ=255) tttCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGt < 2:6100595/151‑1 (MQ=255) tCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTc < 1:5393085/151‑1 (MQ=255) tCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTc > 2:1133076/1‑151 (MQ=255) tCGGCTTACCCAGGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTc < 2:1845027/151‑1 (MQ=255) ggCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCAc < 1:3876249/151‑1 (MQ=255) ggCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGG‑GGGCAAGGCCCGTTCAc > 1:6413917/1‑151 (MQ=255) ggCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGCCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCAc > 1:6147459/1‑151 (MQ=255) gCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCAcc > 2:38196/1‑151 (MQ=255) gCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCAcc < 1:1428338/151‑1 (MQ=255) gCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCAcc < 2:6144503/151‑1 (MQ=255) cTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCg < 2:3496710/151‑1 (MQ=255) ttACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGc > 1:1910197/1‑151 (MQ=255) cccATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCAt < 1:624673/151‑1 (MQ=255) ccATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATg < 2:3989467/151‑1 (MQ=255) cATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATgg > 1:4542798/1‑151 (MQ=255) ccggcccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGAt > 1:3057348/1‑151 (MQ=255) cggcccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGAtt < 1:6042796/151‑1 (MQ=255) cggcccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGAtt > 1:686322/1‑151 (MQ=255) cggcccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGAtt > 2:837724/1‑151 (MQ=255) cggcccgCGTGCAGGCAGCCGCCGCAGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGAtt > 2:3696068/1‑151 (MQ=255) ccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTgg > 1:1183060/1‑151 (MQ=255) ccgCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTgg > 1:125629/1‑151 (MQ=255) gcgTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGt < 2:2063568/151‑1 (MQ=255) gcgTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGt > 2:2721355/1‑151 (MQ=255) cgTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTg < 2:4993453/151‑1 (MQ=255) gcaggcagCCGCCGGTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTgaag < 2:5357659/151‑1 (MQ=255) gcaggcagCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGAATTTCTGGAGA‑TTCGCGCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTgaag < 2:2445287/151‑1 (MQ=255) gcagCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACt < 1:2470820/151‑1 (MQ=255) cagCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTg > 2:5504031/1‑151 (MQ=255) cagCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTg > 2:2491781/1‑151 (MQ=255) ccgccgCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGAt < 2:145564/151‑1 (MQ=255) ccgccgCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGAt < 2:563591/151‑1 (MQ=255) ccgccgCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGAt < 2:2824153/151‑1 (MQ=255) ccgccaCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGAt < 1:1804864/151‑1 (MQ=255) cgccgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATg < 2:632624/151‑1 (MQ=255) gccgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGG‑GCGCAAGGCCCGTTCAGCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGt > 2:4084247/1‑151 (MQ=255) ccgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTc < 2:4877774/151‑1 (MQ=255) ccgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTc < 2:5748332/151‑1 (MQ=255) cgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCg < 1:4858435/151‑1 (MQ=255) cgcTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCg < 2:1420780/151‑1 (MQ=255) tGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGAcc < 1:5060879/151‑1 (MQ=255) gCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGAccc > 1:228430/1‑151 (MQ=255) cAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGcc < 1:1007560/151‑1 (MQ=255) aaCTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGccc > 1:2652129/1‑151 (MQ=255) cTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCAt > 2:6505021/1‑151 (MQ=255) tGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCAtt < 1:5204081/151‑1 (MQ=255) ggAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCg > 2:36138/1‑151 (MQ=255) aaCGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTg < 1:834364/151‑1 (MQ=255) ggggCACCCCGGTGCCTGCGTTTCTGGAGATTTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGt < 2:1377570/149‑1 (MQ=255) gAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTc > 2:4193238/1‑151 (MQ=255) gAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTc < 1:2715801/151‑1 (MQ=255) ggCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGa < 1:1651516/151‑1 (MQ=255) gCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGAt > 1:3236230/1‑151 (MQ=255) cACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATa < 1:4001349/151‑1 (MQ=255) cccAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAgc > 1:5486870/1‑151 (MQ=255) cAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATCgcgc > 2:131412/1‑151 (MQ=255) ggTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGcac < 1:6351753/151‑1 (MQ=255) ggTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGcac > 2:3185629/1‑151 (MQ=255) gTGCCTGCATTGCTGGGGA‑GTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGcacc < 2:6413917/151‑1 (MQ=255) tGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGcacca < 2:2586289/151‑1 (MQ=255) tGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCgg > 1:5306101/1‑151 (MQ=255) tGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCgg > 2:5879484/1‑151 (MQ=255) cATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGc < 1:1866570/151‑1 (MQ=255) cATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGc < 1:4372373/151‑1 (MQ=255) cATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGc > 2:5076633/1‑151 (MQ=255) aTTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAGGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGCTGGCGCCCCCCCgcgcc > 2:5418752/1‑150 (MQ=255) aTTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCg > 1:928632/1‑151 (MQ=255) tttGTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGa < 1:5551483/151‑1 (MQ=255) tttCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGa > 2:6489462/1‑151 (MQ=255) gaga‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTa < 2:3705863/151‑1 (MQ=255) ttCGCGCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACgtg < 2:2266773/151‑1 (MQ=255) ttCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACgtg > 1:6507815/1‑151 (MQ=255) cccGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGa < 1:5952718/151‑1 (MQ=255) ggACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATgg > 1:1967061/1‑151 (MQ=255) ggACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATgg > 1:1704567/1‑151 (MQ=255) acggtacggtGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCTGGCGAAGCCTACGTGGTGATGgag > 2:5148755/1‑151 (MQ=255) ggtacggtGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGaa < 2:2977603/151‑1 (MQ=255) ggtacggtGCGCCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGaa < 1:5769041/151‑1 (MQ=255) gcgcCTGCTGAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATgc < 1:1527567/151‑1 (MQ=255) ctgctgAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCAt < 1:4046474/151‑1 (MQ=255) tgctgAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATc < 1:4314026/151‑1 (MQ=255) tgctgAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATc > 1:6424997/1‑151 (MQ=255) ctgAGTCCGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCAc > 1:4231448/1‑151 (MQ=255) cGTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGgc < 2:290183/151‑1 (MQ=255) gTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGgca < 1:3177961/151‑1 (MQ=255) gTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGgca > 2:1582981/1‑151 (MQ=255) gTTCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGgca > 1:5874340/1‑151 (MQ=255) ttCATGGAAGGC‑GGCAAGGCCCGTTCACCGCCACGGCGCAGCTTGTGGGTGAAGAACTGTGTGTATACCCGGCCCATTTCGTGCTCGATAACGCACAACCGGGCGAAGCCTACGTGGTGATGGAGACAGGCATGCACGTCACAGGGGacag > 2:4510254/1‑151 (MQ=255) gaTGGAAGG‑GGGCAAGGCCCGGTCCCCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGgcagca < 1:3663615/150‑1 (MQ=255) aTGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCAt > 1:3441648/1‑151 (MQ=255) aTGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCAt < 1:1576415/151‑1 (MQ=255) aTGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCAt > 1:2048640/1‑151 (MQ=255) tGGAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGGAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGCCGACAGCGCACCACCGGGCGACGCCCACGTGGCGATGGCGAACGGCATGCGCATCAGCGGGGGCAGCATg > 1:2934860/1‑151 (MQ=255) gAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCATGTc < 1:2196201/151‑1 (MQ=255) gAAGGC‑GGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCATGTc < 2:1202650/151‑1 (MQ=255) | TGGTGCTAGGTTTCGGCTTACCCATGGGCCCGGCCCGCGTGCAGGCAGCCGCCGCTGCGGCAACTGCGGAACGAGGCACCCAGGTGCCTGCATTTCTGGAGA‑TTCGCCCGGACGGTACGGTGCGCCTGCTGAGTCCGTTCATGGAAGGCGGGCAAGGCCCGTTCACCGCCATGGCGCAGATTGTGGGTGAAGAACTGGATGTCGACCCGGCCCATTTCGTGGTCGATAGCGCACCACCGGGCGAAGCCTACGTGGTGATGGAGAACGGCATGCGCATCACCGGGGGCAGCATGTCG > CP009974/5602381‑5602676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |