New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	418657 =	2 (0.010)	126 (0.540) +AAGAAGC	97/214	3.4	92.6%	intergenic (‑236/+415)	RPPX_01715/RPPX_01720	hypothetical protein/lipoprotein
	?	CP009974	= 4147133	20 (0.080)					intergenic (+385/‑636)	RPPX_18425/RPPX_18430	enoyl‑CoA hydratase/conjugal transfer protein TraR
Rejected: Coverage evenness skew score above cutoff.

CGCTGAGTCAAAACAGACAAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418633‑418807                         |                                                                                                                                                        cgcgGAGTGAAGACCGACAAGTTCGCTGCTTGCAGCATGGTGCTTGCTTCGTGGTTCTTGGGGGTGGGCAGCCGGAGCGAGTGGGCCTTCGTTCGCAGCA‑GAGGCGCCGGGTGACCGGTGCGCCCTGACGGCGGGTCACTTTTTGTCAAAc                          <  2:3689108/151‑1 (MQ=2)          aaaaCAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGCTGTGGGCTTTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTCTTGTCAAACGCCACaaaa                 >  2:3723625/1‑151 (MQ=255)                  gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  1:4397799/8‑151 (MQ=255)                   cttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaa        >  1:2030676/7‑151 (MQ=255)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  2:4915498/6‑151 (MQ=25)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:4650770/6‑151 (MQ=25)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  2:539296/6‑151 (MQ=255)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:4121031/6‑151 (MQ=255)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:4130780/6‑151 (MQ=255)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:4194746/6‑151 (MQ=255)                    ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:850486/6‑151 (MQ=255)                     tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTCGTCAAACGCCACCAAAAGCAACCaaaa      >  2:6425315/5‑151 (MQ=11)                     tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  1:6133643/5‑151 (MQ=255)                     tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  1:2566138/5‑151 (MQ=255)                      cttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaaa     >  1:1023127/4‑151 (MQ=25)                       ttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCTTTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTTAAACGCGACAAAAAGTTACCaaaaaa    >  1:1581533/3‑151 (MQ=255)                       ttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaaaa    >  1:2107503/3‑151 (MQ=25)                       ttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCacaaaa    >  1:1065864/3‑151 (MQ=255)                         gcttcttgcttcttgcttcctgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTTTTCACTCGC‑GCAGCTGGCGCATAGTCACCTTTCCGCCCCTACGGCGGCTCACTTCTTGTCAAACGCGACAAAAAGATACCAAAAAAca  >  2:761602/1‑150 (MQ=11)                         |                                                                                                                                                        CGCTGAGTCAAAACAGACAAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC‑GCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418633‑418807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.