Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 1,343,208 Δ2,581 bp RPPX_05930–RPPX_05935 RPPX_05930, RPPX_05935

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 1343208 1345788 2581 338 [0] [0] 338 RPPX_05930–RPPX_05935 RPPX_05930,RPPX_05935

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 13432070 (0.000)314 (1.020) 183/282 0.1 100% intergenic (‑184/‑180) RPPX_05925/RPPX_05930 hypothetical protein/integrase
?CP009974 1345789 = 0 (0.000)intergenic (+112/+815) RPPX_05935/RPPX_05940 ATPase AAA/DNA‑binding protein

Only 100 of 338 total aligned reads displayed.

GCGCAACGAAATTGACGGCGGTAGGGGCTTCAGACTAACAATGCAAACCTGCGTCGCTGCGCTCCGACTGCCTGTCCGGATGAGCGTGGAACGAGTGTCCGGATGTTGGTGGGCTGAGTGTCCGGATGGCGTGGAATCCGCAGGTAGTGGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCAATCCA  >  CP009974/1345640‑1345939
                                                                                                                                                     |                                                                                                                                                      
tttctgctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtggg                                                                                                                                                       <  2:4035811‑M2/2‑1 (MQ=255)
tttctgctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtggg                                                                                                                                                       <  2:2317658‑M2/2‑1 (MQ=255)
 ttctgctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGc                                                                                                                                                      >  1:180998‑M2/149‑151 (MQ=255)
    tgctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAg                                                                                                                                                   >  1:5070197‑M2/146‑151 (MQ=255)
    tgctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAg                                                                                                                                                   <  1:4980242‑M2/6‑1 (MQ=255)
    tgctactagctagggctttcatgggcgcctccaggctggtgacaaagaaatccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAg                                                                                                                                                   <  2:341650‑M2/6‑1 (MQ=255)
     gctcctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAgc                                                                                                                                                  <  1:452094‑M2/7‑1 (MQ=255)
      ctcctagctagggctttcatgggcgccgccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAgcg                                                                                                                                                 <  2:1357898‑M2/8‑1 (MQ=255)
        cctagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGcc                                                                                                                                               <  2:6454225‑M2/10‑1 (MQ=255)
          tagctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCctc                                                                                                                                             <  2:6059993‑M2/12‑1 (MQ=255)
            gctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTg                                                                                                                                           >  1:167491‑M2/138‑151 (MQ=255)
             ctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGc                                                                                                                                          >  1:801331‑M2/137‑151 (MQ=255)
             ctagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGc                                                                                                                                          >  1:1969055‑M2/137‑151 (MQ=255)
              tagggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcggcggccgtgcctcgactacccacagggccggtgcagctgggcgccgggctcccgaccttcgcaaagtgactacttccagccagtgGGCAAGCGCCTCCGcc                                                                                                                                         >  2:6240082‑M2/136‑151 (MQ=255)
                gggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCaa                                                                                                                                       >  1:4739847‑M2/134‑151 (MQ=255)
                 ggctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgagtttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAAc                                                                                                                                      <  1:395968‑M2/19‑1 (MQ=255)
                   ctttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGa                                                                                                                                    <  1:2598585‑M2/21‑1 (MQ=255)
                    tttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAt                                                                                                                                   >  2:5599213‑M2/130‑151 (MQ=255)
                    tttcatgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAt                                                                                                                                   >  2:4809205‑M2/130‑151 (MQ=255)
                       catgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAttct                                                                                                                                <  1:5944874‑M2/25‑1 (MQ=255)
                         tgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAttcttc                                                                                                                              <  1:3003824‑M2/27‑1 (MQ=255)
                         tgggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAttcttc                                                                                                                              >  1:1418303‑M2/125‑151 (MQ=255)
                         ggggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGAttcttc                                                                                                                              <  2:2635413‑M2/27‑1 (MQ=255)
                          gggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCg                                                                                                                             >  2:3954876‑M2/124‑151 (MQ=255)
                          gggcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCg                                                                                                                             <  2:863082‑M2/28‑1 (MQ=255)
                            gcgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCt                                                                                                                           >  2:1807180‑M2/122‑151 (MQ=255)
                             cgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCtt                                                                                                                          <  2:1061624‑M2/31‑1 (MQ=255)
                             cgcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCtt                                                                                                                          <  1:4189546‑M2/31‑1 (MQ=255)
                              gcctccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTa                                                                                                                         <  1:2062589‑M2/32‑1 (MQ=255)
                                 tccaggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCg                                                                                                                      >  1:2649444‑M2/117‑151 (MQ=255)
                                   caggctggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGt                                                                                                                    >  1:573412‑M2/115‑151 (MQ=255)
                                        tggtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTg                                                                                                               >  2:1616426‑M2/110‑151 (MQ=255)
                                          gtgacaaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTgag                                                                                                             <  2:1912021‑M2/44‑1 (MQ=255)
                                             acaaagataaccccgctcgggcgcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGagaag                                                                                                          <  2:4096386‑M2/47‑1 (MQ=255)
                                              caaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGagaaga                                                                                                         >  1:1462351‑M2/104‑151 (MQ=255)
                                               aaagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGAt                                                                                                        >  2:5031910‑M2/103‑151 (MQ=255)
                                                aagaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATg                                                                                                       <  2:3860452‑M2/50‑1 (MQ=255)
                                                 agaaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATgg                                                                                                      <  1:5431409‑M2/51‑1 (MQ=255)
                                                  ggaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGa                                                                                                     <  2:5692290‑M2/52‑1 (MQ=255)
                                                   aaaaccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGaa                                                                                                    >  2:3648682‑M2/99‑151 (MQ=255)
                                                       ccccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCt                                                                                                <  2:3487052‑M2/57‑1 (MQ=255)
                                                        cccgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTg                                                                                               <  2:1474841‑M2/58‑1 (MQ=255)
                                                          cgctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTc                                                                                             >  1:2606647‑M2/92‑151 (MQ=255)
                                                           gctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAAc                                                                                                                                      >  1:2255412‑M2/91‑109 (MQ=255)
                                                           gctcgggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCa                                                                                            >  1:6418092‑M2/91‑151 (MQ=255)
                                                            ctcgggggcagtgcatcgactacacacagggtcggcgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGCGAAGATGGAACGCTgtcca                                                                                           >  1:5245781‑M2/90‑149 (MQ=255)
                                                               gggggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCaaaaa                                                                                        >  2:636657‑M2/87‑151 (MQ=255)
                                                                 gggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAata                                                                                      <  2:1307789‑M2/67‑1 (MQ=255)
                                                                  ggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGGCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAatat                                                                                     <  1:1131927‑M2/68‑1 (MQ=255)
                                                                  ggcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAatat                                                                                     >  1:901674‑M2/84‑151 (MQ=255)
                                                                   gcagtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATAtt                                                                                    <  1:4639360‑M2/69‑1 (MQ=255)
                                                                     agtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGa                                                                                  <  1:3298788‑M2/71‑1 (MQ=255)
                                                                      gtgcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAg                                                                                 >  1:3154702‑M2/80‑151 (MQ=255)
                                                                        gcatcgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGt                                                                               <  2:1539035‑M2/74‑1 (MQ=255)
                                                                            cgactacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGt                                                                           >  2:4632943‑M2/74‑151 (MQ=255)
                                                                               ctacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGc                                                                        >  2:610057‑M2/71‑151 (MQ=255)
                                                                               ctacacacagggtcggtgcagctgggcgtcgggctcccgactttcgcaaagtgactacttacaggtagtgGGCACGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGc                                                                        >  2:5358969‑M2/71‑151 (MQ=255)
                                                                                tacacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCa                                                                       >  2:5914921‑M2/70‑151 (MQ=255)
                                                                                 acacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactactgacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAAAGCAGAAAAAAATATTGAGGTATGTAGCaa                                                                      <  2:771108‑M2/83‑1 (MQ=255)
                                                                                  cacacagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAAt                                                                     >  1:5144169‑M2/68‑151 (MQ=255)
                                                                                     acagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTCGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCt                                                                  >  1:3831822‑M2/65‑151 (MQ=255)
                                                                                      cagggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTc                                                                 >  1:4325666‑M2/64‑151 (MQ=255)
                                                                                        gggtcggtgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCa                                                               >  1:5574325‑M2/62‑151 (MQ=255)
                                                                                               tgcagctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCa                                                        >  2:2821514‑M2/55‑151 (MQ=255)
                                                                                                  agctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTc                                                     <  1:2384819‑M2/100‑1 (MQ=255)
                                                                                                   gctgggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCt                                                    <  1:1303331‑M2/101‑1 (MQ=255)
                                                                                                       ggcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATg                                                >  2:4343450‑M2/47‑151 (MQ=255)
                                                                                                        gcgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGc                                               >  2:1004252‑M2/46‑151 (MQ=255)
                                                                                                         cgtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCa                                              >  1:5328754‑M2/45‑151 (MQ=255)
                                                                                                          gtcgggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAg                                             <  1:1181074‑M2/108‑1 (MQ=255)
                                                                                                           tcgggttcccgactgtcgcaaagtgactactaacaggtagtgGCCCAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAgg                                            <  2:290083‑M2/109‑1 (MQ=255)
                                                                                                             gggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGa                                          >  2:2220590‑M2/41‑151 (MQ=255)
                                                                                                             gggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGa                                          >  1:210960‑M2/41‑151 (MQ=255)
                                                                                                              ggttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGAt                                         <  1:3539684‑M2/112‑1 (MQ=255)
                                                                                                               gttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATc                                        <  1:3709698‑M2/113‑1 (MQ=255)
                                                                                                               gttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATc                                        <  1:6034607‑M2/113‑1 (MQ=255)
                                                                                                                ttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCg                                       >  1:2958038‑M2/38‑151 (MQ=255)
                                                                                                                ttcccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCg                                       <  2:3246340‑M2/114‑1 (MQ=255)
                                                                                                                  cccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCg                                       <  2:933293‑M2/114‑1 (MQ=255)
                                                                                                                   ccgactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCt                                    <  2:2165687‑M2/117‑1 (MQ=255)
                                                                                                                     gactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGa                                  >  2:474981‑M2/33‑151 (MQ=255)
                                                                                                                     gactttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGa                                  >  2:2997901‑M2/33‑151 (MQ=255)
                                                                                                                        tttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCa                               >  1:4670408‑M2/30‑151 (MQ=255)
                                                                                                                         ttcgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCaa                              <  2:3099429‑M2/123‑1 (MQ=255)
                                                                                                                           cgcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCaaga                            <  2:1432590‑M2/125‑1 (MQ=255)
                                                                                                                            gcaaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCaagaa                           <  2:5250063‑M2/126‑1 (MQ=255)
                                                                                                                              aaagtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAgc                         <  2:693254‑M2/128‑1 (MQ=255)
                                                                                                                                 gtgactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCGTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCt                      <  2:4685916‑M2/131‑1 (MQ=255)
                                                                                                                                   gactacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTa                    <  2:5505326‑M2/133‑1 (MQ=255)
                                                                                                                                    actacttacaggtagttTGCAAGCGCCTCTGCCAACGATTTTTCGCTTAGCGGTAGCTGAGGAGATGGAACGCTGTCAAAAATATTGGGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCATTGATCGGCTGATTAAGAAGCGCTTAt                   >  2:2424017‑M2/18‑151 (MQ=255)
                                                                                                                                    actacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTAt                   <  1:610636‑M2/134‑1 (MQ=255)
                                                                                                                                      tacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTAtcg                 <  1:3405994‑M2/136‑1 (MQ=255)
                                                                                                                                      tacttacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTAtcg                 >  2:4228949‑M2/16‑151 (MQ=255)
                                                                                                                                          gacaggtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGc             <  2:4853018‑M2/140‑1 (MQ=255)
                                                                                                                                               gtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATc        >  1:2207493‑M2/7‑151 (MQ=255)
                                                                                                                                               gtagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATc        >  1:961899‑M2/7‑151 (MQ=255)
                                                                                                                                                tagtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCa       >  1:4844425‑M2/6‑151 (MQ=255)
                                                                                                                                                 agtgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCaa      <  2:2182233‑M2/147‑1 (MQ=255)
                                                                                                                                                   tgGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCAATc    >  1:1030997‑M2/3‑151 (MQ=255)
                                                                                                                                                     ggCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCAATCCa  <  1:2722140/151‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                      
GCGCAACGAAATTGACGGCGGTAGGGGCTTCAGACTAACAATGCAAACCTGCGTCGCTGCGCTCCGACTGCCTGTCCGGATGAGCGTGGAACGAGTGTCCGGATGTTGGTGGGCTGAGTGTCCGGATGGCGTGGAATCCGCAGGTAGTGGGCAAGCGCCTCTGCCAACGATTCTTCGCTTAGCGGTAGCTGAGAAGATGGAACGCTGTCAAAAATATTGAGGTATGTAGCAATGCTCCAGCTCTCAGTCTGATGCAGGGATCGGCTGATCAAGAAGCGCTTATCGTCGCCGATCAATCCA  >  CP009974/1345640‑1345939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑