Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,897,4710GC69.9% 3609.3 / inf 4428intergenic (‑5249/‑3348)RPPX_08470/RPPX_08480tryptophan synthase subunit beta/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (668/664);  new base C (1496/1594);  total (2168/2260)
Fisher's exact test for biased strand distribution p-value = 2.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 4496 total aligned reads displayed.

CTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAG  >  CP009974/1897321‑1897621
                                                                                                                                                      |                                                                                                                                                      
ttACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTAtgtg                                                                                                                                                        <  1:1512929/150‑1 (MQ=255)
   cacCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGc                                                                                                                                                     <  2:4225833/151‑1 (MQ=11)
    acCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCGAACAGCACCACGGGCTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCa                                                                                                                                                    >  2:2749571/1‑151 (MQ=11)
     ccATCACGCTGACCAATAAAGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCAc                                                                                                                                                   >  2:3353960/1‑151 (MQ=11)
     ccATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTACGTGGGCAc                                                                                                                                                   >  2:4660279/1‑151 (MQ=9)
     ccAGCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCGACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCAc                                                                                                                                                   >  2:2376390/1‑151 (MQ=255)
      cgtCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCAcc                                                                                                                                                  >  2:5896045/3‑150 (MQ=11)
       aTCACGCTGACCAACAAAGATGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCAcca                                                                                                                                                 >  1:4628484/1‑149 (MQ=11)
          acccTGACCAACGAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGGCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAAcc                                                                                                                                              <  2:3578452/148‑1 (MQ=255)
              tGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGcc                                                                                                                                          >  2:2491923/1‑151 (MQ=255)
                aCCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCgg                                                                                                                                        <  1:4015951/151‑1 (MQ=255)
                      aaaGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCa                                                                                                                                  >  1:4895973/1‑151 (MQ=11)
                       aaGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCaa                                                                                                                                 >  1:2567461/1‑151 (MQ=11)
                       aaGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCaa                                                                                                                                 <  2:3830625/151‑1 (MQ=11)
                         gACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATg                                                                                                                               <  2:125746/151‑1 (MQ=255)
                          aCGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCAACGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGc                                                                                                                              >  1:782089/1‑151 (MQ=14)
                            ggtcTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCa                                                                                                                            <  1:3629107/148‑1 (MQ=255)
                             gCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCAt                                                                                                                           >  1:544737/1‑151 (MQ=11)
                              cttGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATc                                                                                                                          >  1:4277415/3‑151 (MQ=11)
                              ccTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATc                                                                                                                          <  2:787479/151‑1 (MQ=14)
                              ccTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCATCGTCGTGACAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATc                                                                                                                          <  1:3052690/151‑1 (MQ=14)
                               cTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCg                                                                                                                         >  1:5679615/1‑151 (MQ=255)
                               cTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCGAACAGCACCACGGGCTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCg                                                                                                                         >  1:1002200/1‑151 (MQ=17)
                                 gCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGAc                                                                                                                       <  2:2843979/151‑1 (MQ=14)
                                  ccGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCGAACAGCACCACGGGCTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGAc                                                                                                                       >  1:270415/1‑150 (MQ=17)
                                   cGATCAACAACCACTCGGAGCTTTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCGGCCAACAGCACCACGGGTTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGAcgc                                                                                                                     <  1:1124682/151‑1 (MQ=17)
                                   cGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCGATGTGGGCACTAACCAGCCGGTGGTCAATACCATCGAcgc                                                                                                                     >  2:3443110/1‑151 (MQ=255)
                                       caacaaCCACTCGGAGCTTTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCGGCCAACAGCACCACGGGTTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGAcgccgtt                                                                                                                 >  2:5412387/1‑147 (MQ=17)
                                       caacaaCCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTc                                                                                                                 <  2:1869511/151‑1 (MQ=17)
                                       caacaaCCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCaatg                                                                                                                                              <  1:2940082/122‑3 (MQ=11)
                                        aacaccCCCTCGGAGCTGTACTTCAAGCTGCCCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCa                                                                                                                <  1:1270499/151‑1 (MQ=14)
                                        aacaacCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCa                                                                                                                >  1:2419941/1‑151 (MQ=17)
                                          caacCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAgc                                                                                                              <  1:4764321/151‑1 (MQ=14)
                                          caacCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAgc                                                                                                              <  1:4516836/151‑1 (MQ=17)
                                          caacCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAgc                                                                                                              <  2:2170751/151‑1 (MQ=17)
                                           aacCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcg                                                                                                             <  1:3183401/151‑1 (MQ=17)
                                            acCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcgg                                                                                                            >  1:5803854/1‑151 (MQ=17)
                                             ccACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcggc                                                                                                           <  2:5186709/151‑1 (MQ=14)
                                               aCTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCCGCGgcgc                                                                                                         >  2:4551021/1‑151 (MQ=255)
                                                cTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACCGCAACCGCCCCGGACAACGGCGATGTGGGCACGAACCAGCGGGTGGTCAACGCCATCGACGCGGTCAGCGGCGCa                                                                                                        >  2:1487506/1‑151 (MQ=18)
                                                cTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCa                                                                                                        <  1:3894968/151‑1 (MQ=17)
                                                 tCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCAACGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAg                                                                                                       <  1:6185624/151‑1 (MQ=17)
                                                  cGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGa                                                                                                      <  1:1780631/151‑1 (MQ=255)
                                                    gAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATg                                                                                                    >  2:161098/1‑151 (MQ=255)
                                                     aGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCAACGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGc                                                                                                   <  1:3415392/151‑1 (MQ=18)
                                                        tGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATg                                                                                                >  1:678762/1‑151 (MQ=18)
                                                            cTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCCGCGCAGATGCGTGGAAg                                                                                            >  2:622890/1‑151 (MQ=18)
                                                              tCAAGCTGACCGACGGCACCACCGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGtt                                                                                          >  1:4152727/1‑151 (MQ=17)
                                                                aaGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCg                                                                                        <  2:6468467/151‑1 (MQ=18)
                                                                aaGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCg                                                                                        <  2:2629879/151‑1 (MQ=18)
                                                                   cTGACCGACGGCACCACTGTCGTCGTGGCGGCCAACAGCACCACGGGTTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTTAGCGGCGCTGATGCGTGGAAGTTCGaaa                                                                                     <  2:3183469/151‑1 (MQ=255)
                                                                          aCGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCACTGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAaacctgaa                                                                              >  2:1975397/1‑151 (MQ=255)
                                                                          aCGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAaacctgaa                                                                              <  2:4877001/151‑1 (MQ=21)
                                                                           cGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAaacctgaac                                                                             <  1:6329469/151‑1 (MQ=255)
                                                                           cGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAaacctgaac                                                                             >  1:52233/1‑151 (MQ=21)
                                                                           cGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAaacctgaac                                                                             <  1:2113888/151‑1 (MQ=21)
                                                                            ggCACCACCGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAaacctgaacc                                                                            >  1:5915150/1‑151 (MQ=18)
                                                                             gCACCACTGTCGTTGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCGCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAaacctgaacct                                                                           >  2:6320349/1‑151 (MQ=21)
                                                                              caccacTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAaacctgaacctg                                                                          >  2:6028679/1‑151 (MQ=255)
                                                                                   ccGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGCGGAAGTTCGAAAACCTGAACCTGGACaa                                                                     >  1:5327122/1‑151 (MQ=25)
                                                                                     gtcgtcgtGGCAGCCAACAGCACCAACGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGa                                                                   >  1:3516171/1‑151 (MQ=25)
                                                                                       ggtcgtGGCGGCGAGCAGCACGACGGGTTCGGCGGCTGCAACTGCCCCGGACAACGTCTATGGCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTTAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGAcc                                                                 <  2:5294404/150‑2 (MQ=255)
                                                                                        gtcgtGGCAGCGAACAGCACCACGGGCTCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTc                                                                <  2:69528/151‑1 (MQ=255)
                                                                                        gtcgtGGCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGAccc                                                                >  2:3061059/1‑149 (MQ=25)
                                                                                        gtcgtGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTc                                                                >  1:5126970/1‑151 (MQ=255)
                                                                                           gtGGCAGCCAACAGCACCACCGGTTCGGCTACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAAAcccccg                                                             <  1:1890850/151‑3 (MQ=25)
                                                                                           gtGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAg                                                             <  2:3697909/151‑1 (MQ=25)
                                                                                            gggCAGCCAGCAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGGCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGAccccggt                                                            <  2:4991435/150‑7 (MQ=19)
                                                                                              gCAGCCAACAGCACCACCGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCa                                                          <  1:2319554/151‑1 (MQ=25)
                                                                                                aGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGc                                                        <  2:5613999/151‑1 (MQ=255)
                                                                                                aGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCaac                                                        <  2:4780126/151‑3 (MQ=25)
                                                                                                  ccAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCAc                                                      >  1:4385454/1‑151 (MQ=255)
                                                                                                  ccAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCAc                                                      <  2:2257282/151‑1 (MQ=25)
                                                                                                   ccaCAGCACCTCCGGTGCGGCGACTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCGTCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACAcc                                                     <  2:4310600/149‑1 (MQ=37)
                                                                                                    aaCCGCACCACCGGTTCGGCGACCGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCg                                                    <  2:4423528/151‑1 (MQ=255)
                                                                                                        gCACCACCGGGTCGGCGTCTGCAACCGCACCGGACAACATCTATGTTGGCACTAAGCAGCCGGTGGTCAATGCGATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCCAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGt                                                <  2:5082327/151‑1 (MQ=255)
                                                                                                         caccacCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCActaccgtc                                               >  1:901121/1‑144 (MQ=25)
                                                                                                           cgaccGGTTCGGCGACTGCAGCCGCCCCGGACGACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGAc                                             <  2:6131215/149‑1 (MQ=255)
                                                                                                           ccaccGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGAc                                             <  1:3768017/151‑1 (MQ=255)
                                                                                                           ccaccGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGAc                                             <  2:2961966/151‑1 (MQ=255)
                                                                                                            caccGGTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGAcc                                            >  1:5011036/1‑151 (MQ=255)
                                                                                                            caacGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGAcc                                            <  2:550556/148‑1 (MQ=255)
                                                                                                              ccGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACcga                                          >  1:3319950/1‑151 (MQ=255)
                                                                                                                 gTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACcgacga                                       <  2:3961104/151‑1 (MQ=25)
                                                                                                                 gTTCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACcgacga                                       <  2:1024097/151‑1 (MQ=255)
                                                                                                                  ttCGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTCCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAg                                      >  2:5765287/1‑151 (MQ=255)
                                                                                                                  ttCGGCGACTGCAACTGCCCCGGACAACGTCTATGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTTAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAg                                      >  2:2054454/1‑151 (MQ=255)
                                                                                                                  tgcGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAg                                      <  1:6439396/149‑1 (MQ=25)
                                                                                                                    cGGCGACTGTAGCTGCACCAGACAACGTCTATGTCGGCACCAATGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGcc                                    <  2:1140487/151‑1 (MQ=25)
                                                                                                                    cGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGcc                                    >  1:1401639/1‑151 (MQ=255)
                                                                                                                    cGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCAGATGCGTGGAAGt                                                                                           >  1:224248/1‑96 (MQ=25)
                                                                                                                       ccaCTGCAACCGCCCCGGACAACGTCTATGTCGGCACTAACGCGCCGGTGGTCAATGCCATCGATGCCGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGCGACCGACGAGCCTgg                                 >  2:1712772/3‑151 (MQ=255)
                                                                                                                        gACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTggc                                >  2:1371586/1‑150 (MQ=255)
                                                                                                                         aCTGCAACCGCCCCGGACAACGTCTATGTCGGTACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGCTGACCGACGAGCCAggca                               >  2:4068739/1‑149 (MQ=255)
                                                                                                                                     ccGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCTGATGCATGGAAGTTCGAAaacctgaacc                                                                            <  1:2828679/94‑1 (MQ=255)
                                                                                                                                      cGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAGCGa                  <  1:1648667/151‑1 (MQ=255)
                                                                                                                                              gTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGata          >  1:6091774/1‑151 (MQ=255)
                                                                                                                                              gTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGata          <  2:894234/151‑1 (MQ=255)
                                                                                                                                                  aTGTCGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGCGCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATatcat      <  1:2015807/151‑1 (MQ=255)
                                                                                                                                                    gtgGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACAtcgtca    <  1:5551830/151‑1 (MQ=39)
                                                                                                                                                      |                                                                                                                                                      
CTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCGACTGCAACCGCCCCGGACAACGTCTATGTGGGCACTAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAG  >  CP009974/1897321‑1897621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑