BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	3,756,612	0	G	A	70.0%	626.6 / inf	463	intergenic (+494/+146)	RPPX_16775/RPPX_16780	hypothetical protein/phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
Reads supporting (aligned to +/- strand): ref base G (67/68); new base A (145/170); total (225/238)
Fisher's exact test for biased strand distribution p-value = 5.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.58e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 464 total aligned reads displayed.

CCGACTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAAAAGCGAAAAGCGCTC  >  CP009974/3756462‑3756759

ccGTCTCCCCTTTCCGCCCTTGTGTGGGGTCCGTTTATGCCGTGGCAAAAAGGGACCAACAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCg                                                                                                                                                     <  1:995223/151‑1 (MQ=17)

  gattCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGGCCAAAAACCGTCGGGTCCCATCATCCGGCCCCCACGCTGCGCTCCGGGGTCCCCTCCCTCCGGCCTTTCCCCCGGGAGCACGCGCCGCAGGCCCCCTc                                                                                                                                                   >  1:193848/4‑151 (MQ=14)

            tCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCGCCTCCGCTGCGCCCCGGGGTCCCCCCGCTCCGGCCTTGCTCCCCGGCGCACCCGGTGCCGCCCCCCGCCCTgggcgcc                                                                                                                                         >  2:3993452/1‑147 (MQ=11)

               gCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAg                                                                                                                                      <  2:1434526/151‑1 (MQ=255)

                cccTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAgc                                                                                                                                     <  2:1173077/151‑1 (MQ=255)

                 ccTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAgcg                                                                                                                                    <  2:3834503/151‑1 (MQ=255)

                     aCGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTg                                                                                                                                <  2:3386597/151‑1 (MQ=255)

                      cggcggGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGGCCCTGGGGCCTCAGCGCTTgg                                                                                                                               >  1:3962395/1‑150 (MQ=255)

                      cggcggGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCCTCCATGGGGGCTCAACGCtcgc                                                                                                                               >  2:4373927/1‑148 (MQ=255)

                      cggcggGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGCCCCTGCTCCCGGGGGCACGCCCTTCCCGGCCCGCCCCCTGGGCCTCAGCGCCTGa                                                                                                                               >  2:2959792/1‑151 (MQ=14)

                        gcggGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCTCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACg                                                                                                                             >  2:3297065/1‑151 (MQ=255)

                         cggGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCGTGGGGCCGCAGCGCTTGACgg                                                                                                                            >  1:5404873/1‑151 (MQ=255)

                           ggTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGc                                                                                                                          <  1:1034465/151‑1 (MQ=255)

                            gTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGcc                                                                                                                         >  1:4856403/1‑150 (MQ=255)

                             tCCCTTTTTGTCGTGGCAATAAGGGACCAAAAACCGTCGGCTCCCAGCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCGCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCAt                                                                                                                        <  1:2559486/151‑1 (MQ=255)

                               ccTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATcc                                                                                                                      <  1:2356027/151‑1 (MQ=255)

                               ccTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATcc                                                                                                                      <  1:4589856/151‑1 (MQ=255)

                               ccTATTTGGTGTTGCACAATGGGACCAAGAACCGTCGGCACCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATcc                                                                                                                      <  1:1363901/151‑1 (MQ=17)

                                cTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGCGCACGCGCTGCCGGCCCCCCCCATGGGCCCCCAGCCCTTCACGGGCCTccc                                                                                                                     >  2:5696527/1‑150 (MQ=17)

                                 tttttGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCCTCCAt                                                                                                                    >  1:6541459/1‑151 (MQ=255)

                                   tttGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGTGCACGCGCGGCGGGCCCCGTCCATGGGGCCTGAGCGCTTGACGGGCATCCATGc                                                                                                                  >  1:1417481/1‑151 (MQ=255)

                                    ttGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGcc                                                                                                                 >  1:5670957/1‑151 (MQ=255)

                                        cGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGGGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTc                                                                                                             <  2:3103562/151‑1 (MQ=255)

                                         gTGGCAAAAAGGGACCAAACACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGcc                                                                                                                                          <  2:4984737/121‑1 (MQ=255)

                                         gTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGcc                                                                                                                                          >  1:4984737/1‑121 (MQ=255)

                                              aaaaaGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTcc                                                                                                       <  1:921374/151‑1 (MQ=255)

                                              aaaaaGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGCAGCACGCGCTGCACGCCCCATCCATGGGGCCTCAGCGCTTGACGAGCATCCCTGCCCGTCATCTcc                                                                                                       >  2:2215169/1‑151 (MQ=255)

                                               aaaaGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTccc                                                                                                      >  1:2046560/1‑151 (MQ=255)

                                                aaaGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCt                                                                                                     >  2:699972/1‑151 (MQ=255)

                                                aaaGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCt                                                                                                     <  1:2698192/151‑1 (MQ=255)

                                                    ggACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGc                                                                                                 <  2:4437785/151‑1 (MQ=255)

                                                      aCCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCCTACACGGGGCCTCAGCGCATGACGGCCATCCATGCCCGTCCTCcccccccccca                                                                                               >  2:3041938/1‑144 (MQ=17)

                                                          aaaaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGTCCGTCATCGCCCGCCGCAAGgcc                                                                                           >  1:1003216/1‑151 (MQ=17)

                                                           aaaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCt                                                                                          <  1:3981356/151‑1 (MQ=255)

                                                            aaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTg                                                                                         <  1:5704901/151‑1 (MQ=255)

                                                              ccGTCGGCTCCCATCAGCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTgcg                                                                                       <  2:5238397/151‑1 (MQ=255)

                                                                 tCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTc                                                                                    <  2:4081087/151‑1 (MQ=255)

                                                                 tCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTc                                                                                    <  1:3285520/151‑1 (MQ=255)

                                                                 tCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCCCCGCAAGGCCTGCGCTc                                                                                    >  1:6175864/1‑151 (MQ=255)

                                                                 gcGGCTCCCACCATCCGGCCCCTACGCGGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTc                                                                                    <  2:4714944/150‑1 (MQ=255)

                                                                   ggCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCTCGGGAGTACGCGCCCAAGGCCCCACCCATGGGGCCTCTGCGCTTGACGGGCATCCATGCCCGTAATCTCCCTCAGCAAGCCCTgagacagg                                                                                  >  1:1823866/1‑144 (MQ=11)

                                                                    gCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGc                                                                                 <  1:4668082/151‑1 (MQ=255)

                                                                    gCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCCAGGCCTGCGCTCGGc                                                                                 >  1:3090352/1‑151 (MQ=255)

                                                                      tCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGcct                                                                               >  1:5141430/1‑151 (MQ=255)

                                                                       cccATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGcctc                                                                              >  1:3808642/1‑151 (MQ=255)

                                                                        ccATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATTCCCGTCATCTCCCTCCGCACGGCCTGCGCTCGGcctcc                                                                             >  1:1595185/1‑151 (MQ=14)

                                                                           tcatcCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGa                                                                          >  2:4916919/1‑151 (MQ=255)

                                                                               ccGGCCCCTGCGCGGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTc                                                                      <  2:6375046/151‑1 (MQ=255)

                                                                                cGGCGCGTACGCTGCGCGCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCGCGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCg                                                                     <  2:2055423/151‑1 (MQ=14)

                                                                                   ccccTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCaa                                                                  <  1:6487875/151‑1 (MQ=255)

                                                                                     ccTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATc                                                                <  1:775554/151‑1 (MQ=255)

                                                                                      cTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCCATCt                                                               >  1:2188880/1‑151 (MQ=255)

                                                                                      cTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCt                                                               <  2:1701241/151‑1 (MQ=255)

                                                                                        gcGCTGCCCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCCTGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGc                                                             <  2:2535963/150‑1 (MQ=255)

                                                                                        aCGGTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGc                                                             <  1:35298/151‑1 (MQ=255)

                                                                                        aCGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAAGCtac                                                             >  1:5334400/1‑149 (MQ=14)

                                                                                         cGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCACGGCCTGCGCTCGGCCTCCTGAAGTCGCAAGCTGCg                                                            >  2:3945682/1‑151 (MQ=255)

                                                                                           cTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCCTCCATGGGGCCTCAGCGCTTGACGGGCGGCCACGCCCGCCATCTCCTCTCGCACGCCCTGCGCTCGGCCTCCTGAAGCCGCACTCTCCgcg                                                          >  2:4517553/1‑149 (MQ=14)

                                                                                           cTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCCGAAGTCGCACTCTGCGTc                                                          >  2:5272968/1‑151 (MQ=255)

                                                                                               gcTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCt                                                      >  2:3459084/1‑151 (MQ=255)

                                                                                                cTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCCTGGGGCCTCAGCGCTTGACGGGCGTCACTGCCCGCCCTCTCCCTCCGCAGGGCCTGCGCGCGGCCTCCCGAAGTCGCACTCTGCGTCGccgg                                                     >  2:2742883/1‑149 (MQ=14)

                                                                                                cTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTg                                                     <  1:3438881/151‑1 (MQ=255)

                                                                                                cTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCCCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCCTCGCCTg                                                     >  2:3142671/1‑151 (MQ=255)

                                                                                                  ccGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAAGCGCCGTCGCCTggt                                                   >  1:741/1‑149 (MQ=255)

                                                                                                  ccGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGaa                                                   <  2:5785592/151‑1 (MQ=255)

                                                                                                   cGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAAc                                                  <  1:55137/151‑1 (MQ=255)

                                                                                                     gggTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTa                                                <  1:4453585/151‑1 (MQ=255)

                                                                                                       gTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGACCAAcc                                              >  1:52339/1‑151 (MQ=255)

                                                                                                       gTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCCGAACTAcc                                              >  1:4370949/1‑151 (MQ=255)

                                                                                                         ccccTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCCGAACTCCcgc                                            >  2:1889116/1‑151 (MQ=11)

                                                                                                          cccTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcg                                           <  1:1488936/151‑1 (MQ=255)

                                                                                                          cccTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcg                                           <  1:4744330/151‑1 (MQ=255)

                                                                                                           ccTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcgc                                          <  1:1737652/151‑1 (MQ=255)

                                                                                                           ccTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcgc                                          <  2:862626/151‑1 (MQ=255)

                                                                                                            cTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgcgcg                                         <  1:4245688/151‑1 (MQ=255)

                                                                                                                cTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTa                                     <  2:6133403/151‑1 (MQ=255)

                                                                                                                    ggCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAg                                 >  2:1531664/1‑151 (MQ=255)

                                                                                                                    ggCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAg                                 <  2:287125/151‑1 (MQ=255)

                                                                                                                     gCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGc                                <  2:6508944/151‑1 (MQ=255)

                                                                                                                        ttGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAg                             <  2:5106757/151‑1 (MQ=255)

                                                                                                                        ttGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTCGCAGCAAg                             >  2:6196538/1‑151 (MQ=11)

                                                                                                                             cccGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaa                        <  1:3644931/151‑1 (MQ=255)

                                                                                                                              ccGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaa                       <  1:1179924/151‑1 (MQ=255)

                                                                                                                                 ggAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagc                    <  1:2895513/151‑1 (MQ=255)

                                                                                                                                  gAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcg                   <  2:2373837/151‑1 (MQ=255)

                                                                                                                                   aGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcga                  >  1:594348/1‑151 (MQ=255)

                                                                                                                                      aCGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaa               >  1:5767386/1‑151 (MQ=255)

                                                                                                                                      aCGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGTACTACCGCGCGCTGAGAAGCAAGATCaaaagcgaaaa               >  1:4067643/1‑151 (MQ=14)

                                                                                                                                       cgcgCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaag              >  1:2462018/1‑151 (MQ=255)

                                                                                                                                        gcgcTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagc             >  1:186267/1‑151 (MQ=255)

                                                                                                                                        gcgcTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagc             <  1:2823426/151‑1 (MQ=255)

                                                                                                                                         cgcTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagcg            <  2:1947430/151‑1 (MQ=255)

                                                                                                                                          gcTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagcga           >  1:606187/1‑151 (MQ=255)

                                                                                                                                          gcTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCCCGCTTAGAAGCAAGATCaaaagcgagaagcga           >  2:5922772/1‑151 (MQ=255)

                                                                                                                                            tGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagcgaat         >  2:2295697/1‑150 (MQ=255)

                                                                                                                                             gCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCCTCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGCAGTCGCAATCTGCCTCGCCTGAACTACCGCGCGCTTAGCAGCACGATCaaaagcgaaaagcgaaaa        >  2:4599368/1‑151 (MQ=14)

                                                                                                                                              cAGGCCCCATCCGTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgaaaagcgaaaag       <  2:5423607/151‑1 (MQ=255)

                                                                                                                                              cAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCaaaagcgaaa                >  2:371531/1‑142 (MQ=255)

                                                                                                                                                 gCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaaaagcgagaagcgaattcggt    <  2:3628162/151‑7 (MQ=17)

                                                                                                                                                 gCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAGGCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAAAAGCGAAAAgcgc    >  1:5834126/1‑151 (MQ=255)

CCGACTCACCTTTCCGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCGTCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAAAAGCGAAAAGCGCTC  >  CP009974/3756462‑3756759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`