| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,910,258 | A→G | intergenic (+162/‑497) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,910,258 | 0 | A | G | 87.5% | 1292.2 / 148.9 | 620 | intergenic (+162/‑497) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (37/39); new base G (238/294); total (284/336) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 620 total aligned reads displayed.
TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405 | gcgcccgCCCGCGCCTTCATCAACCGGCGGCGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:6515738/145‑1 (MQ=17) gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt > 1:5710682/1‑150 (MQ=255) aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:5390613/147‑1 (MQ=25) ggCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAcc < 2:4269486/150‑1 (MQ=21) cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGa > 2:900631/1‑151 (MQ=25) cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCACCACGTACCCTTCTAGGa > 2:1009048/1‑151 (MQ=21) aCATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGc > 1:5527017/1‑151 (MQ=21) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg < 2:5021109/151‑1 (MQ=21) aTCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCgg < 2:2973494/151‑1 (MQ=21) ggtggtGTCGCCCCACACCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCCGCCCAATGCCTCCAGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCGcc < 2:2686837/151‑1 (MQ=21) ctctgtCGCCCCGTACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCACCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGAACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCcg < 1:2454518/148‑1 (MQ=18) cggtgCCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCGATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCcg < 2:3453609/150‑1 (MQ=255) ggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgc < 1:1514539/151‑1 (MQ=21) gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCa < 2:3966314/119‑1 (MQ=255) gccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCCGTCGTTAACCGCCCCCCCTGCCACCGCATCCATCATCCGGCCCCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:1766987/145‑1 (MQ=18) ccacgcacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAgg < 2:1519859/146‑1 (MQ=21) cgcgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 2:645187/146‑1 (MQ=255) cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4240658/151‑1 (MQ=21) cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4538721/151‑1 (MQ=21) cacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc > 2:2067603/6‑110 (MQ=14) ccggacCGTGGTGGGAGCGGGTTCACCCGCGAATAGGCCGAACCTGCCGCCCAATACCCCCGGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:3351764/147‑1 (MQ=21) gtacCGTCGTAGGGGCGGGTGCACCCGCGAATAGCCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:422563/149‑1 (MQ=21) ccGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAAGCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:1009048/151‑1 (MQ=21) gtGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:6350408/150‑1 (MQ=255) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:2911883/151‑1 (MQ=255) cgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAcc < 1:3673383/129‑1 (MQ=18) tAGGGGCTGGTTCACCCCCGAATAACCCGCTCCTGCCGCCCAATACCTCCAGTCACTCCTCGCCGCTCCCGCCACCGCATTCATCACTCGGCACCGTCGCCCCCTGCCGTGGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 2:1639978/151‑1 (MQ=16) tAGGGGCGGGATCACCCGCGAATAGGCCGCACCTGCCGCCCAATGCCGCCACTCGTTCCCCCCCGCACAAGCCACCGCCTTCATCAATCGGTACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 1:6194787/151‑1 (MQ=21) tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAATCGGCACCCTCGCCCCGCACCCTATGACAACCGCACGCACCCGCGAAGAAGCCGGACCAgccgc > 2:4505260/1‑151 (MQ=14) ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGccc > 1:1593723/1‑151 (MQ=255) ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAAACCGCACCCTCGCCACCCCCCCTTGTAGGAGCGGGCTCACCAGCGAACAGGCCGCACCCCCCGccc > 2:2872948/1‑151 (MQ=17) gCGGGTTCCGCCGCGACTAGGCCGGAGTTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCGCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:689157/151‑1 (MQ=21) gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCAccc > 1:5787464/1‑104 (MQ=18) cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACTCCCCCTTGTAGGACCCCGCTCACCCCCGAATAGGCCGGACCTCCCGCCCACTa > 1:4837289/1‑151 (MQ=18) ttCACCCGCGAATAGGCCGGACTTGCTGCCCATTCCCCCCACTCATTCACCGCCGCACCCGCCCCCGCCTTCACCATTCGGAACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcccc < 2:1182994/151‑1 (MQ=25) tCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc < 1:3141732/118‑1 (MQ=21) cccccGCGCGTCGGCCGTCCCTGCCGCCCAATGCCTCCGGTCGCTCCCCGCCGCGCCCGCCCCCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa < 2:6117620/149‑1 (MQ=18) cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGc < 1:541606/107‑1 (MQ=255) aCCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAg < 1:3049596/151‑1 (MQ=25) cccGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa < 2:5569481/122‑1 (MQ=255) ccGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGt > 1:1661599/1‑108 (MQ=21) ccGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCCGGTTCACCCGCGAATAGGCCCGACCTGCCGCCCAATACCCCCATTc > 2:2431593/1‑151 (MQ=25) cgcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg < 2:1449694/105‑1 (MQ=255) cgcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCgg > 1:1449694/1‑105 (MQ=255) gcgAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAt < 1:2120577/151‑1 (MQ=25) gAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGGACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTc > 2:2581413/1‑151 (MQ=37) gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCCCCACGCCCCCTTGTATGAGCGGGCTCACCCGCGCATAGGCGGGTCCGGCCGCCCCATACCCGCAATcctcc > 2:5253853/1‑147 (MQ=21) atagcgcGGACCTGCCGCCCGTTACCGCCGGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc < 2:5821620/145‑1 (MQ=21) aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg < 1:5166212/100‑1 (MQ=255) aGGCCGGACCTGCCGCCCAATACCTCCAGTCGCTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg < 2:4665094/151‑1 (MQ=25) ggCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc < 1:4900409/82‑2 (MQ=18) gCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg < 2:2797213/93‑1 (MQ=21) ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTCCCGCGCAATACCCCCTGCCATCCACCGACg > 1:647946/1‑151 (MQ=37) ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:6166645/114‑1 (MQ=25) cgcgccTGCGGCCCAATACCGCCGGGCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACcgccgc < 2:4621644/147‑1 (MQ=18) cGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt > 1:421108/1‑86 (MQ=18) ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATATGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCa > 1:3956981/1‑151 (MQ=255) gACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAc < 1:344162/151‑1 (MQ=21) cTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCCCTGCCGCCCAACACCCCCCGCCATCCACCGTCCCAcccc > 2:4164177/1‑150 (MQ=25) cTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCg > 1:329590/1‑151 (MQ=255) gccgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAAAAGGcc < 2:5716119/106‑1 (MQ=21) accgccCAGTACGTCCACTCACTCAGCGCCGCCCGCGTCAACGCTTACATCAATCGGTACGGTCGCCACGTCCCGGTGTAGGAGCGGGTTGTCCCGCGAATAGGCCGGACCTGCCCCCCAATACCCCCAGTCATTCACCGGCGCACCCGcc < 2:53238/150‑1 (MQ=9) gccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc > 1:1139180/1‑68 (MQ=255) gccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAcc > 1:53226/1‑151 (MQ=255) aaTCCCTCCAGTCATCCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAt < 2:813439/151‑1 (MQ=18) aCCTCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa > 1:2363351/1‑113 (MQ=255) aCCTCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa < 2:2363351/113‑1 (MQ=255) aCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTcg > 1:1903487/1‑151 (MQ=255) ccccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcgcc > 1:5586804/1‑150 (MQ=255) cccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGACACGCCCCCTTATAGGAGCAGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCgg < 1:660712/151‑1 (MQ=25) ccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGc < 1:888416/57‑1 (MQ=255) ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatcaa < 1:1315731/151‑6 (MQ=18) ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatcaa < 1:2587909/151‑6 (MQ=18) ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcgcccg > 2:4743827/1‑148 (MQ=21) gTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc > 2:134224/1‑121 (MQ=255) tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg > 1:4642532/1‑151 (MQ=255) tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCCCCTTCGCTGGCAAg > 2:2274458/1‑151 (MQ=25) cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:6051981/96‑1 (MQ=25) cACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGc < 1:1852741/151‑1 (MQ=255) cACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCCTGTACGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGCCATTCACCCTCGCACCCCCCACCGCCCTCGCGCGCAAGCCCGc > 2:6022545/1‑151 (MQ=21) ccgccgCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTc > 1:2031916/1‑151 (MQ=255) gccgcACCTGCCACCGCATTCATCAATCGGCACCATCGCCACg < 1:3573074/43‑1 (MQ=255) gccgcACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGt < 1:5934100/52‑1 (MQ=255) cccgCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCAcc > 2:6227022/4‑114 (MQ=255) cccgCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGCGCAAGCCCGCTCCTtcatca > 2:1273687/4‑151 (MQ=21) cgCCACCGCCTTGGCCACTCGGCACCGGCGCAACGCCCCCTTGAAGGAGCGGGCTCACCCGCGAATCGAGGGGACCTGCCGCCCCATACCCCCAGTCATGCACCGTCCCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAAt > 2:4897044/2‑151 (MQ=255) gCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATc > 1:4055659/1‑151 (MQ=255) cccccGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg < 1:2693465/148‑1 (MQ=255) ccACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg < 1:2846175/151‑1 (MQ=255) aCCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCACTACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCACGCCCGCTCCTACATCACTCGGt > 1:4996281/1‑151 (MQ=25) ccGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCACTCggcg > 2:3074916/1‑149 (MQ=255) aTTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTcatcaa < 2:1102502/121‑6 (MQ=11) tcacccaTCGGCACCGTCGCCCCGCCCCCTTGCAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATACGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCg < 1:1772650/145‑1 (MQ=18) tcaATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCCATACCCCCAGGCATTCACCGTCGCACCCGCCACCCCATTCGCGGGCAAGCCCGCTCCTACACCACTCGGTGGCATCGccc > 2:3239465/1‑150 (MQ=21) aTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAtt < 1:3838322/107‑1 (MQ=255) aTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt > 2:3838322/1‑107 (MQ=14) cGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg > 1:4738336/1‑54 (MQ=11) ggCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTAcc > 2:1870530/1‑151 (MQ=255) gCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCg < 2:3613729/151‑1 (MQ=255) gCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCAGCGCCACGTACCg > 1:4311358/1‑151 (MQ=255) | TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |