BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	2,982,223	T→G	intergenic (‑302/+644)	RPPX_13295 ← / ← RPPX_13300	integrase/integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	2,982,223	0	T	G	100.0%	1037.5 / NA	292	intergenic (‑302/+644)	RPPX_13295/RPPX_13300	integrase/integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (154/138); total (154/138)

Only 100 of 292 total aligned reads displayed.

TGATCTGGCCTCCTGAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCTGCGGCACCATCATCTACATCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCAAGAGAAAG  >  CP009974/2982076‑2982368

tGATCTGGCCTCCTGAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTgg                                                                                                                                                <  1:2549606/151‑1 (MQ=255)

 gATCTGGCCTCCTGAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGt                                                                                                                                               >  2:2898329/1‑151 (MQ=255)

      ggCCTCCTGAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCg                                                                                                                                          >  1:616971/1‑151 (MQ=255)

            ctGAACACCGTTACCGGTGGGCGAGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACca                                                                                                                                    <  1:2223765/151‑1 (MQ=255)

              gAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcatc                                                                                                                                  >  2:4206846/1‑151 (MQ=255)

              gAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcatc                                                                                                                                  >  2:2269296/1‑151 (MQ=255)

              gAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcatc                                                                                                                                  >  2:3868601/1‑151 (MQ=255)

              gAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcagc                                                                                                                                  >  2:5749577/1‑149 (MQ=255)

               aaCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcatca                                                                                                                                 >  1:4384416/1‑151 (MQ=255)

                acacCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACcatcat                                                                                                                                <  1:5418383/151‑1 (MQ=255)

                 cacCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCatcatc                                                                                                                               <  1:6390393/151‑1 (MQ=255)

                  acCGTTACCGGTGGGCGGGCGGAGGCTCCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGCGCCATGTGCAAGCAGCAATGCGCTGACCGGGGCATGCCTGACTGTCAGTCACGCGCAGTCCATTACGTGGTCTGCGGCACCatcatcc                                                                                                                              >  2:5588557/1‑150 (MQ=14)

                   ccGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGATGCAGTCCATTCCGTGGTCTGCGGCCCCATCATCTa                                                                                                                             >  2:6509530/1‑151 (MQ=255)

                    cGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTAc                                                                                                                            >  1:854358/1‑151 (MQ=255)

                       tACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACagc                                                                                                                         <  1:4543818/151‑3 (MQ=255)

                        aCCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACagcg                                                                                                                        >  2:2172167/1‑148 (MQ=255)

                           ggTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTg                                                                                                                     <  2:4043190/151‑1 (MQ=255)

                           ggTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTg                                                                                                                     >  1:1019381/1‑151 (MQ=255)

                             tGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGtt                                                                                                                   <  1:421827/151‑1 (MQ=255)

                              gggCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTg                                                                                                                  >  1:298453/1‑151 (MQ=255)

                              gggCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTg                                                                                                                  <  1:3236799/151‑1 (MQ=255)

                              gggCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTg                                                                                                                  >  2:5303651/1‑151 (MQ=255)

                              gggCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTg                                                                                                                  >  1:528090/1‑151 (MQ=255)

                                gCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCt                                                                                                                <  2:6342260/151‑1 (MQ=255)

                                  gggTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTgg                                                                                                              <  1:5738521/151‑1 (MQ=255)

                                   ggTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGt                                                                                                             <  2:3574916/151‑1 (MQ=255)

                                   ggTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGt                                                                                                             >  2:1578488/1‑151 (MQ=255)

                                      ggAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTTTTGCTGGTGAc                                                                                                          >  2:2517008/1‑151 (MQ=255)

                                      ggAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGAc                                                                                                          >  1:896077/1‑151 (MQ=255)

                                          gCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCg                                                                                                      >  1:4272885/1‑151 (MQ=255)

                                              cATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGt                                                                                                  <  2:2678876/151‑1 (MQ=255)

                                               aTTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGtt                                                                                                 >  1:1628460/1‑151 (MQ=255)

                                                   gCTGACGAGGCCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTc                                                                                             <  2:1714613/151‑1 (MQ=255)

                                                     tGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCAc                                                                                           <  2:1345482/151‑1 (MQ=255)

                                                     tGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCAc                                                                                           >  2:1190633/1‑151 (MQ=255)

                                                     tGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCAc                                                                                           <  2:3425130/151‑1 (MQ=255)

                                                      gACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACg                                                                                          >  1:680529/1‑151 (MQ=255)

                                                      gACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACg                                                                                          <  1:4058326/151‑1 (MQ=255)

                                                         gagaCCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCg                                                                                       >  2:4065617/1‑151 (MQ=255)

                                                           gaCCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGc                                                                                                    >  1:3525288/1‑136 (MQ=255)

                                                           gaCCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGAt                                                                                     >  1:2760498/1‑151 (MQ=255)

                                                           gaCCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGACCATTCCGCGGTCTGCGGCCCCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCAGGCCGAt                                                                                     >  2:4561632/1‑151 (MQ=14)

                                                             ccAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTg                                                                                   >  2:2436213/1‑151 (MQ=255)

                                                               aGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTc                                                                                 >  2:1020356/1‑151 (MQ=255)

                                                                gTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCa                                                                                <  2:4759239/151‑1 (MQ=255)

                                                                     gcgAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAgg                                                                           <  2:248229/151‑1 (MQ=255)

                                                                     gcgAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAgg                                                                           <  1:450384/151‑1 (MQ=255)

                                                                     gcgAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAgg                                                                           <  1:4295332/151‑1 (MQ=255)

                                                                      cgAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAggg                                                                          >  1:1122081/1‑151 (MQ=255)

                                                                      cgAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAggg                                                                          <  2:435209/151‑1 (MQ=255)

                                                                       gagaTCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAgggg                                                                         >  2:4404908/1‑151 (MQ=255)

                                                                         gaTCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAgggggn                                                                       <  1:2456484/151‑2 (MQ=255)

                                                                          aTCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGaa                                                                      >  1:4903043/1‑151 (MQ=255)

                                                                             cTGAGGCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAAcgc                                                                   <  2:4944679/151‑1 (MQ=255)

                                                                             cTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAAcgc                                                                   <  1:6004565/151‑1 (MQ=255)

                                                                               gAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAAcgccg                                                                 <  2:4232191/151‑1 (MQ=255)

                                                                                  ccATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCaa                                                              <  2:5229041/151‑1 (MQ=255)

                                                                                   cATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCaaa                                                             <  1:1437760/151‑1 (MQ=255)

                                                                                      gtgCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGcc                                                          >  1:106980/1‑151 (MQ=255)

                                                                                         cAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCAtg                                                       >  1:5906257/1‑151 (MQ=255)

                                                                                          aaGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCAtgt                                                      >  1:2294665/1‑151 (MQ=255)

                                                                                          aaGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCAtgt                                                      <  2:6093751/151‑1 (MQ=255)

                                                                                          aaGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCAtgt                                                      <  1:5912809/151‑1 (MQ=255)

                                                                                           agcagcAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCAtgtg                                                     >  1:2538520/1‑151 (MQ=255)

                                                                                                caATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATc                                                <  2:1098976/151‑1 (MQ=255)

                                                                                                   tGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAgg                                             <  1:447316/151‑1 (MQ=255)

                                                                                                    gCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCTATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCACAGCCATGTGCGATCAggg                                            >  1:5065947/1‑151 (MQ=255)

                                                                                                     cGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCAGCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGc                                           <  2:6217677/151‑1 (MQ=255)

                                                                                                     cGATGACCGGGGCATGCCTAACTGTCAGTCAGGTGCAGTCCATTCCGTGGGCTGCAGCACCATCATCAACAGAGCGGTTGGTGGTGATATAGCCGTCTGTCACCCCGCTTGTCACGAGCGGGTACGCCCCAAAGACATGTGAGATCatagt                                           >  2:6032489/1‑147 (MQ=2)

                                                                                                      gATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCt                                          >  2:3095250/1‑151 (MQ=255)

                                                                                                      gATGACCGGGGCATGCCTGACTGTCAGTCAGGTCCAGTCCATTCCGTGGTCTGCGGCACCATCAACTACAGCGCTGTTGCTCGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCCATCAGGGCt                                          >  2:3090693/1‑151 (MQ=14)

                                                                                                        tGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTgc                                        >  1:1317691/1‑151 (MQ=255)

                                                                                                          aCCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTgcag                                      <  2:6212232/151‑1 (MQ=255)

                                                                                                           ccGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTgcagc                                     >  2:2939046/1‑151 (MQ=255)

                                                                                                               ggCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTg                                 <  1:366668/151‑1 (MQ=255)

                                                                                                                gCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTgg                                <  1:3868601/151‑1 (MQ=255)

                                                                                                                 cATGCCTGACTGTCGGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGt                               <  2:875836/151‑1 (MQ=255)

                                                                                                                  aTGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTa                              >  2:3478837/1‑151 (MQ=255)

                                                                                                                  aTGCCTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTa                              <  1:2117678/151‑1 (MQ=255)

                                                                                                                     ccTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGaa                           <  2:1911247/151‑1 (MQ=255)

                                                                                                                      cTGACTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGTTGACATCGGCGTTTGTCACGCCGATTGTCACGCGTGGGCCCGCCGCAAAGCCATGTGCGCTCAGGGTTTCAGCAGTGGTATAAg                          >  2:4718671/1‑151 (MQ=11)

                                                                                                                         aCTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGc                       <  1:4617296/151‑1 (MQ=255)

                                                                                                                         aCTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGc                       >  1:3151480/1‑151 (MQ=255)

                                                                                                                          cTGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGcc                      <  1:5340212/151‑1 (MQ=255)

                                                                                                                           tGTCAGTCAGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGccc                     <  1:2699983/151‑1 (MQ=255)

                                                                                                                            gtcagtcaGGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCg                    <  1:651625/151‑1 (MQ=255)

                                                                                                                                 tcagGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTctct               >  1:4691396/1‑151 (MQ=255)

                                                                                                                                 tcagGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTctct               <  2:4857216/151‑1 (MQ=255)

                                                                                                                                  cagGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCtt              <  2:1488420/151‑1 (MQ=255)

                                                                                                                                   agGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAg                          >  2:4610477/1‑138 (MQ=255)

                                                                                                                                   agGTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCttt             <  1:1737558/151‑1 (MQ=255)

                                                                                                                                    ggTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTc            >  1:2594431/1‑151 (MQ=255)

                                                                                                                                     gTGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTcc           <  1:6282597/151‑1 (MQ=255)

                                                                                                                                      tGCAGTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCa          >  2:906620/1‑151 (MQ=255)

                                                                                                                                          gTCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCCCGCCGCTTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGGGGTAGAAGTGCCCGCCTCTTTCCaagag      >  1:280305/1‑151 (MQ=17)

                                                                                                                                           tCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCaagaga     <  2:5906622/151‑1 (MQ=255)

                                                                                                                                           tCCATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCaagaga     <  1:1348538/151‑1 (MQ=255)

                                                                                                                                            ccATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCaagagaa    >  2:1392095/1‑151 (MQ=255)

                                                                                                                                             cATTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGGCTCTTTCCaagagaaa   >  2:1045358/1‑151 (MQ=255)

                                                                                                                                              aTTCCGTGGTCTGCGGCACCATCATCTACAGCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCaagagaaag  <  2:3721344/151‑1 (MQ=255)

TGATCTGGCCTCCTGAACACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCATGTGCAAGCAGCAATGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCTGCGGCACCATCATCTACATCGCTGTTGCTGGTGACATCGGCGTTTGTCACGCCGATTGTCACGAGGGGGAACGCCGCAAAGCCATGTGCGATCAGGGCTGCAGCAGTGGTAGAAGTGCCCGTCTCTTTCCAAGAGAAAG  >  CP009974/2982076‑2982368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`