| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,844,127 | C→T | intergenic (+345/‑1) | RPPX_17120 → / → RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,844,127 | 0 | C | T | 98.4% | 1144.7 / ‑1.9 | 318 | intergenic (+345/‑1) | RPPX_17120/RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base C (1/4); new base T (152/159); total (154/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 346 total aligned reads displayed.
ATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843980‑3844277 | aTTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTggg > 2:5899510/1‑151 (MQ=255) tGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGc > 1:5309174/1‑151 (MQ=255) gTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCt > 1:3951920/1‑151 (MQ=255) gTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCt > 1:5213927/1‑151 (MQ=255) ttATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCta > 2:1188290/1‑151 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 1:585692/1‑151 (MQ=255) tCTGTGAAAAAATTTTTGAATATTTTTGAAATTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAACGCTACATTGTGGGGCtatcg > 2:6533078/1‑149 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc > 1:2352214/1‑151 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt > 2:3252903/1‑151 (MQ=255) tgtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCt > 1:2288565/1‑151 (MQ=255) gtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTc > 1:4086302/1‑151 (MQ=255) gtgAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTc < 2:1968395/151‑1 (MQ=255) aaaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGc > 2:6420085/1‑151 (MQ=255) aaaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGc > 1:2591245/1‑151 (MQ=255) tttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgag > 1:4411435/1‑151 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgc < 2:4200121/151‑1 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgc < 2:5309174/151‑1 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGAGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgc < 1:1113176/151‑1 (MQ=255) tGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcg < 1:1082512/151‑1 (MQ=255) tGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcg > 2:6377730/1‑151 (MQ=255) ttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcat > 1:1332791/1‑151 (MQ=255) ttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatgg > 2:605972/1‑151 (MQ=255) ttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatgg > 1:55948/1‑151 (MQ=255) tGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggc > 1:3705450/1‑151 (MQ=255) tGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggc > 2:5252118/1‑151 (MQ=255) gAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca > 2:2496821/1‑151 (MQ=255) gAAAATTAGTGTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 2:6459877/151‑1 (MQ=255) aaaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcgtggcaa > 2:4071136/1‑150 (MQ=255) aaaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggcat < 1:1197944/151‑1 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa < 1:382924/151‑1 (MQ=255) tGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTc < 1:2076789/151‑1 (MQ=255) tGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTc > 2:483381/1‑151 (MQ=255) aCAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCGGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAg < 1:305184/151‑1 (MQ=255) cAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc < 1:4312335/151‑1 (MQ=255) cAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc > 2:304288/1‑151 (MQ=255) cAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc < 2:1262852/151‑1 (MQ=255) cAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc > 2:3444574/1‑151 (MQ=255) atcccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg < 1:902313/149‑1 (MQ=255) aGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg > 1:6401508/1‑151 (MQ=255) aGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCg < 1:5553265/151‑1 (MQ=255) cccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGACTCAGTTCAAAGCTACACTGTGGGGCCATAGCTCAGCTGGGACAGCGCCTGCATGGCACGCAGGAGCCCAGccgc > 2:1462912/1‑148 (MQ=255) ccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAGCGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGtt < 2:294923/151‑1 (MQ=255) cTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc < 1:4802438/151‑1 (MQ=255) aaTCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATc < 2:4392626/151‑1 (MQ=255) aaTCCGATCTTAATATGCGCCCAGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATc > 1:2436246/1‑151 (MQ=255) ccGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCg > 1:1942761/1‑151 (MQ=255) ccGATCGTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAATCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCg < 1:2777916/151‑1 (MQ=255) atgttACTATGCGCCCGGTCCACAGGGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCtt < 2:4720336/148‑1 (MQ=38) aTCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGTTCAGCGGTTCGATCCCGCtt > 2:2280834/1‑151 (MQ=255) aTCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGCAGAGCGCCTGCATGGCAAGCAGGAGGTCGGCGGTTCGAGCCCGcct > 2:5706332/1‑149 (MQ=255) tCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTa < 1:829832/151‑1 (MQ=255) cTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAg < 1:601318/151‑1 (MQ=255) tAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCt < 1:3912450/151‑1 (MQ=255) atatGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTcc > 2:2537283/1‑151 (MQ=255) tatGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTcca > 1:1316277/1‑151 (MQ=255) tatGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTcca > 1:2121752/1‑151 (MQ=255) gcgcCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTCGCTccacca > 1:4923294/1‑151 (MQ=255) ccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattc > 1:334319‑M1/1‑147 (MQ=255) ctcccACAGCGACGACCGAAAACGAAGAGCCAGGCACCCGACCAGCGATGCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTg < 2:3614271/148‑1 (MQ=37) cGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAatttg > 1:2509818‑M1/1‑146 (MQ=255) gTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccg < 2:678640‑M1/151‑7 (MQ=255) gCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattcccctcagca > 1:274699‑M1/1‑138 (MQ=255) ggATGACCGAAAACGAAGCGCCAGGCACCCAGCCAGCGAGTCACTTCAGGGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTc < 2:1942761/150‑1 (MQ=37) cGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAatttcgcttagtag > 1:6131634‑M1/1‑137 (MQ=255) tGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagcca > 1:5659963‑M1/1‑134 (MQ=255) gAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaa > 1:939741‑M1/1‑133 (MQ=255) aacgaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaag > 1:1517003‑M1/1‑132 (MQ=255) gaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggct < 2:4667702‑M1/151‑23 (MQ=255) aaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCg < 2:3889840/151‑1 (MQ=255) gaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGCGGTCCGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataag > 1:6242147‑M1/1‑123 (MQ=255) aaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagc > 2:4266234‑M1/1‑122 (MQ=255) cgcCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCAc < 1:1710314/151‑1 (MQ=255) gcCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaaga < 1:5767347‑M1/151‑34 (MQ=255) ccAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagat < 2:4825679‑M1/151‑35 (MQ=255) ccAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagat < 2:2396826‑M1/151‑35 (MQ=255) cACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTcg < 2:1681066/127‑1 (MQ=255) ccagccagCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTGCCGCGGCTCGCGATAGCGGAACGGCACGTAGGTTACg > 2:6134281/1‑151 (MQ=37) cagccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccag < 2:2886997‑M1/151‑44 (MQ=255) agccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagc < 1:317872‑M1/151‑45 (MQ=255) gccagcGATTCAGTTCAAAGCTACGTTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCACGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagca < 2:2206570‑M1/151‑46 (MQ=255) gccagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcgcagcagccaagactgatacgaaacatcggttacagcc > 2:5079457‑M1/1‑106 (MQ=255) cagcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaa > 2:2729554‑M1/1‑104 (MQ=255) agcGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaac < 1:5400020‑M1/151‑49 (MQ=255) gATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccgg < 2:3521349‑M1/151‑52 (MQ=255) cAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtctt < 1:2960196‑M1/151‑56 (MQ=255) cAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtctt > 1:3389415‑M1/1‑96 (MQ=255) aGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttg < 2:5099289‑M1/151‑57 (MQ=255) tCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATccc > 2:631256/1‑77 (MQ=255) aaaGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccgcttagcagccaaggctgataagcaagatcgggtccagcaaaccggtcttgaaggt < 1:5028805‑M1/151‑62 (MQ=255) cTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAgg < 1:4684013/151‑1 (MQ=255) tttgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGa > 2:2613562/8‑151 (MQ=21) tgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGaca < 1:2897717/146‑1 (MQ=18) aaatGCGGTGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGaca < 2:4411435/148‑1 (MQ=255) attccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGacac < 1:1997385/147‑1 (MQ=21) aatccGGGGCTATAGCTCAGCCGGGAGAGCGCCTGCATGGCATGCAGGAGGTCTGCGGTTCGATCCCGCTTAGCGCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGacac < 2:3007746/147‑1 (MQ=255) tttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc > 2:31926/4‑151 (MQ=21) tttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc < 1:3483846/148‑1 (MQ=21) ttGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTg > 1:3273552/1‑86 (MQ=255) atccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc < 2:5356782/148‑1 (MQ=255) tccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc > 1:3586377/3‑54 (MQ=255) | ATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843980‑3844277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |