| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 5,515,235 | A→G | intergenic (‑22/+120) | RPPX_24605 ← / ← RPPX_24610 | transposase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 5,515,235 | 0 | A | G | 98.1% | 733.9 / 1.4 | 212 | intergenic (‑22/+120) | RPPX_24605/RPPX_24610 | transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/2); new base G (106/102); total (108/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
Only 100 of 212 total aligned reads displayed.
CAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515095‑5515382 | caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGATCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct > 2:6433240/4‑151 (MQ=1)caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct > 2:296034/4‑151 (MQ=1)caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct < 1:3164908/148‑1 (MQ=1)caacGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAAct < 1:2617498/148‑1 (MQ=1) aaaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAt > 1:6388139/1‑151 (MQ=14) aaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAtt < 2:2241558/151‑1 (MQ=14) aaTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAtt < 2:2529060/151‑1 (MQ=14) aTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAttt > 1:4990332/1‑151 (MQ=17) aTCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCACCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAAttt > 2:5452803/1‑151 (MQ=17) cGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGCGGGCAGTCCAATTTcc > 2:5220238/1‑150 (MQ=18) tACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGa > 1:6154570/1‑151 (MQ=25) tACCTAACTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGa < 2:4014079/151‑1 (MQ=255) aCCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGAt < 1:4019145/151‑1 (MQ=37) aGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACg < 1:5019868/151‑1 (MQ=255) aGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACg > 2:2722331/1‑151 (MQ=255) aGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACg > 1:5035278/1‑151 (MQ=255) aGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACg < 2:577818/151‑1 (MQ=255) gtgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGa > 2:5683706/1‑151 (MQ=255) tgtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGTATTGCTCGGTGTACTTACCCATGGATCCCCCCAGCGATGGATCGGTGTCCAAATTATTGGGAGCAGTCCAATGTCAGGATcgcctac > 2:5514458/1‑145 (MQ=11) gtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAcc > 1:3675026/1‑151 (MQ=255) gtTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGAcc > 2:787945/1‑151 (MQ=255) gAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt > 1:6108503/1‑151 (MQ=255) gAGCCACCTTTCGGAAACCGCGGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCt < 1:2756602/151‑1 (MQ=255) aGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtg > 2:2265083/1‑151 (MQ=255) ccACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCtgtg > 2:2853135/1‑151 (MQ=255) aCCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTggg < 2:1013480/151‑1 (MQ=255) ccTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGa < 1:3977327/151‑1 (MQ=255) cTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAg > 1:3628278/1‑151 (MQ=255) tttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGc < 1:5699367/151‑1 (MQ=255) tttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGc > 2:6265982/1‑151 (MQ=255) ttCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCg < 2:6135913/151‑1 (MQ=255) tCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCgg < 1:4730521/151‑1 (MQ=255) cGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCGCTGTGGGAGCggg > 2:1547490/1‑151 (MQ=255) gagaCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCGGTGAGCTTGAGTTGCTCGGTGTACTTGCCCATAGGTCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCg < 2:2058266/148‑1 (MQ=17) aaCGGTTGCTGCGGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCACCTTCTTGGGGGCAGTCCAATATCAGGATCCACGACCCCTGTGGGAGTGGGCGAg < 2:5978459/151‑1 (MQ=17) aCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGc > 2:239797/1‑151 (MQ=255) aCCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGc > 2:4318228/1‑151 (MQ=255) ccGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGcc > 1:1330945/1‑151 (MQ=255) ccGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGcc > 2:5088816/1‑151 (MQ=255) ccGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGcc > 1:5074221/1‑151 (MQ=255) cGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGccc < 1:3570774/151‑1 (MQ=255) gTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcg > 2:3776418/1‑151 (MQ=255) ttGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcgc < 2:1668825/151‑1 (MQ=255) tgctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcgcg < 1:1053090/151‑1 (MQ=255) tgctgcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCcgcg < 2:1916610/151‑1 (MQ=255) gttgcCGTCAAGGTAGGCGGTGATCGCTGTGAGCTTGAATTGCGCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGa < 2:4749892/149‑1 (MQ=255) gcCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAgg < 2:3948952/151‑1 (MQ=255) ccGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAggg > 2:6100743/1‑151 (MQ=255) ccGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGCACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGCAGCGGGCGACCACGCGAAggg > 2:3844821/1‑151 (MQ=255) cGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGc > 1:3496434/1‑151 (MQ=255) gTCCAGGTAGGCTGTGGTCGCTGTGAGCTTGAATTGCTCGGTGTACCTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCt < 2:6322900/151‑1 (MQ=255) tCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTg < 2:1131938/151‑1 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGc > 1:3026002/1‑151 (MQ=255) ccAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGc > 2:1059802/1‑151 (MQ=255) aGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCaa > 1:2285457/1‑151 (MQ=255) aGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCaa < 2:2624530/151‑1 (MQ=255) gCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagcagc < 1:256551/151‑1 (MQ=255) gCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAagcagc < 1:2086847/151‑1 (MQ=255) gCTGTGATCGCTGTGAGCTTGAATGGCTCGGTGTACTTACCCATAGATCCCCCAAGGGCTGGATGGGTGTCCAACTTCTTGGGGGCACACCAATCTCAGGATCCACGACCCCTGAGGGAGCGGGCGGCCCCGCGACGGCCTGCaccgcccc > 2:6509045/1‑144 (MQ=17) gtgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGcccc < 1:2192440/151‑1 (MQ=255) tgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCa < 1:4144624/151‑1 (MQ=255) tgATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCa < 1:4360453/151‑1 (MQ=255) aTCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAAt < 1:6335728/151‑1 (MQ=255) aTCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAAt < 1:2481131/151‑1 (MQ=255) cGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTa > 1:4753033/1‑151 (MQ=255) cGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGCGCTGCAAAGCAGCCCCAATTa > 2:321526/1‑151 (MQ=255) cTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACa > 1:1196279/1‑151 (MQ=255) tgAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTg < 2:4720597/151‑1 (MQ=255) gAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGt > 1:5411595/1‑151 (MQ=255) tcTTGAATTGCTCGGTGAACTTACCCCTAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCt < 2:3026002/150‑1 (MQ=255) cTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTg > 1:740717/1‑151 (MQ=255) ttGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGa < 1:1040720/151‑1 (MQ=255) tGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAg > 2:660922/1‑151 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg > 2:1612552/1‑151 (MQ=255) aaTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCg < 1:2354451/151‑1 (MQ=255) aTTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCgg < 1:576393/151‑1 (MQ=255) tGCTCGGTGTACTTACGCATAGATCCCCCAAGGGTTGGATGGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCGGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGaa < 2:3398502/151‑1 (MQ=255) cTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc < 2:5616766/151‑1 (MQ=255) cTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtc > 2:4492762/1‑151 (MQ=255) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc > 1:783760/1‑151 (MQ=255) cGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc > 1:6292686/1‑151 (MQ=255) cGGGGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAAtctc < 2:6002625/151‑1 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc < 2:89495/151‑1 (MQ=255) ggTGTACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTcc < 1:1633571/151‑1 (MQ=255) gtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAg < 2:5312054/67‑1 (MQ=255) gtACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAg > 1:5312054/1‑67 (MQ=255) tACTTACCCATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGc > 2:2194168/1‑151 (MQ=255) ccATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGa > 1:5274946/1‑151 (MQ=255) cATAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGaa > 1:5562664/1‑151 (MQ=255) tAGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTCGCTTCAGGAAGc > 2:6375364/1‑151 (MQ=255) aGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGcc < 1:4547161/151‑1 (MQ=255) aGATCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGcc < 1:902438/151‑1 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt > 1:5188952/1‑151 (MQ=255) tCCCCCAAGGGTTGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGt < 1:4271628/151‑1 (MQ=255) ttGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGcc < 1:6542577/137‑1 (MQ=255) tGGATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGc > 1:2702094/1‑151 (MQ=255) ggATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCt > 1:1010262/1‑151 (MQ=255) gATTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTg > 2:574409/1‑151 (MQ=255) aTTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTgg < 1:5360754/151‑1 (MQ=255) aTTGGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTgg > 1:2888165/1‑151 (MQ=255) | CAGCGTCGAAGCAGACTGAAATCGATACCTAAGTGTTGAGCCACCTTTCGGAAACCGTTGCTGCCGTCCAGGTAGGCTGTGATCGCTGTGAGCTTGAATTGCTCGGTGTACTTACCCATAGATCCCCCAAGGGTTGGATTAGTGTCCAACTTCTTGGGGGCAGTCCAATTTCAGGATCCACGACCCCTGTGGGAGCGGGCGAGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTACATTGTCTGAGCGGAATCTCCTGGCTTCAGGAAGCCAGTGCCTGCGAACGCTGG > CP009974/5515095‑5515382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |