BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	5,597,130	T→C	R617R (CGT→CGC)	RPPX_24915 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	5,597,130	0	T	C	100.0%	1180.3 / NA	429	R617R (CGT→CGC)	RPPX_24915	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (194/235); total (194/235)

Only 100 of 437 total aligned reads displayed.

CTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACCACTGCGCGTGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGTTCGCT  >  CP009974/5597013‑5597277

cTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTcc                                                                                                                    <  2:4554230/151‑1 (MQ=11)

 tttAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcg                                                                                                                   <  2:644108/151‑1 (MQ=9)

  ttcgcgaggaggTGCAGCGGTATTTTGAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcgg                                                                                                                  <  2:4861243/145‑1 (MQ=11)

  ttAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcgg                                                                                                                  >  1:5156287/1‑151 (MQ=14)

  ttAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcgg                                                                                                                  <  1:31120/151‑1 (MQ=9)

   tAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcggc                                                                                                                 >  1:585603/1‑151 (MQ=14)

   tAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcggc                                                                                                                 >  1:1587086/1‑151 (MQ=9)

     gCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCcggcgg                                                                                                               >  2:3077827/1‑151 (MQ=12)

       cAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtg                                                                                                             >  1:3528239/1‑151 (MQ=12)

       cAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtg                                                                                                             <  1:5453792/151‑1 (MQ=12)

        aggaggTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtgg                                                                                                            >  1:5404216/1‑151 (MQ=12)

         ggaggTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggt                                                                                                           <  2:3046511/151‑1 (MQ=17)

         ggaggTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggt                                                                                                           <  1:2323398/151‑1 (MQ=12)

            ggTGCAGCGGTGTTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTGTCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggtggt                                                                                                        <  2:1031600/151‑1 (MQ=255)

            ggTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggtggt                                                                                                        >  1:606530/1‑151 (MQ=14)

               gCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggtggtggt                                                                                                     <  1:5644761/151‑1 (MQ=12)

               gCAGCGGGAGTGGAAGAGCGGCAGGGCACAGGGTGAAGGGATGAAAGCGTTGCGGATCTCGGGTAGCCGGACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAGCCCAACTTCCTTGGGTTGCTCACCTCCGGCggtggtggtggt                                                                                                     <  2:4123776/151‑1 (MQ=11)

                cAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGtt                                                                                                    >  2:3264552/1‑151 (MQ=12)

                cAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGtt                                                                                                    <  1:1381051/151‑1 (MQ=12)

                 aGCGGTATTTGAGGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGttt                                                                                                   <  2:2684619/151‑1 (MQ=12)

                    ggTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTaaa                                                                                                <  1:4225653/151‑1 (MQ=12)

                    ggTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTaaa                                                                                                >  1:1988540/1‑151 (MQ=12)

                     gTATTTGAAGAGCAGCATGGCACAGCTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAAc                                                                                               <  1:6162566/151‑1 (MQ=255)

                      tATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGGGGGGGTTTAAACg                                                                                              >  2:1165393/1‑151 (MQ=9)

                        tttGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCa                                                                                            <  2:6386959/151‑1 (MQ=18)

                          tGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAgg                                                                                          <  1:2125786/151‑1 (MQ=19)

                                gCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGAtgtt                                                                                    <  2:2015958/151‑1 (MQ=255)

                                gCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGAtgct                                                                                    >  1:2953783/1‑149 (MQ=16)

                                 cGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGAtgttg                                                                                   >  1:3829869/1‑151 (MQ=255)

                                 cGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTAGTTTAAAAGCAGGGAtgttg                                                                                   <  2:2512043/151‑1 (MQ=255)

                                  ggCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGAtgttgt                                                                                  <  1:2055881/151‑1 (MQ=255)

                                  ggCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGAtgctgt                                                                                  >  1:4540296/1‑151 (MQ=9)

                                    cATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTgg                                                                                <  2:3976597/151‑1 (MQ=255)

                                    cATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTgg                                                                                <  1:4827826/151‑1 (MQ=255)

                                      tGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGtt                                                                              <  2:2935078/151‑1 (MQ=255)

                                      tGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCGTGGGTCGCTCACCTCCGGCGGGGGTGGTGGTTGAAACGCAGGGATGCTGTGGtt                                                                              >  2:6011445/1‑151 (MQ=11)

                                          acaGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGGGGTGGTGGGTTAAAGGCAGGGATGCTGTGGTTCAAc                                                                          >  1:6389870/1‑151 (MQ=11)

                                           caGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACa                                                                         >  1:4363994/1‑151 (MQ=255)

                                              gTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCt                                                                      <  1:1049992/151‑1 (MQ=255)

                                              gTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCt                                                                      <  1:1507438/151‑1 (MQ=255)

                                               ttGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCtt                                                                     <  2:3911339/151‑1 (MQ=255)

                                                 gAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTAt                                                                   >  1:627522/1‑151 (MQ=255)

                                                   agagATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCg                                                                 >  1:4865845/1‑151 (MQ=255)

                                                    gagaTGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGc                                                                <  2:1294267/151‑1 (MQ=255)

                                                       aTGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTGCAACATCTTATCGCTCa                                                             >  2:5366507/1‑151 (MQ=255)

                                                           aaGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGAc                                                         <  2:585603/151‑1 (MQ=255)

                                                           aaGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCaacac                                                         >  1:4901424/1‑148 (MQ=255)

                                                              cGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAggg                                                                                         <  2:190271/116‑1 (MQ=255)

                                                              cGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAggg                                                                                         >  1:190271/1‑116 (MQ=255)

                                                               gTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGcc                                                     <  2:5694425/151‑1 (MQ=255)

                                                                 tGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTa                                                   <  1:2608648/151‑1 (MQ=255)

                                                                 tGCGCATCTCGGGTAGCCGCACGGTGTCTAGCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTa                                                   <  2:3824047/151‑1 (MQ=255)

                                                                  gcgcATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTac                                                  <  1:4970093/151‑1 (MQ=255)

                                                                    gcATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTacaa                                                >  2:5288605/1‑151 (MQ=255)

                                                                    gcATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTacaa                                                <  1:6538345/151‑1 (MQ=11)

                                                                          cGGGTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCt                                          <  1:2225847/151‑1 (MQ=255)

                                                                           gggTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTg                                         >  1:2402006/1‑151 (MQ=255)

                                                                            ggTAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                                        >  1:2709022/1‑151 (MQ=255)

                                                                              tcgCCGCACGATGTCTATCGAGCTGGCCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCag                                      <  2:4347952/149‑1 (MQ=11)

                                                                              tAGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCag                                      <  2:2255020/151‑1 (MQ=14)

                                                                               aGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCaga                                     >  2:4071244/1‑151 (MQ=255)

                                                                               aGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCaga                                     >  1:3719812/1‑151 (MQ=11)

                                                                               aGCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCaga                                     >  1:3927939/1‑151 (MQ=14)

                                                                                gCCGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCagaa                                    >  2:747705/1‑151 (MQ=255)

                                                                                  cGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCagaaga                                  <  2:5063059/151‑1 (MQ=14)

                                                                                  cGCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGCGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTCATCGCTCAACACGGCCTACAACAGCCTGCagcaga                                  >  2:2854687/1‑151 (MQ=11)

                                                                                   gCACGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAagag                                 >  2:3538900/1‑151 (MQ=14)

                                                                                   gCACGGTGTATATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAagag                                 <  2:5098055/151‑1 (MQ=255)

                                                                                     aCGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAagagcg                               <  2:2416418/151‑3 (MQ=11)

                                                                                      cGGTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGa                              <  1:3388030/151‑1 (MQ=11)

                                                                                       ggTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGAt                             >  2:1092439/1‑151 (MQ=255)

                                                                                       ggTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGAt                             >  1:445607/1‑151 (MQ=255)

                                                                                       ggTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGac                             <  1:1318374/151‑2 (MQ=11)

                                                                                       ggTGTCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGac                             <  2:137802/151‑2 (MQ=11)

                                                                                        gtgtCTATCGAGCTGGCCCCTACTGCGCGCGTGAACCCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAGCGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATg                            <  2:1818419/151‑1 (MQ=14)

                                                                                         tgtCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGc                           <  2:4803650/151‑1 (MQ=255)

                                                                                         tgtCTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGc                           <  1:780712/151‑1 (MQ=255)

                                                                                           tCTAGCGAGCTGACCACTACTGCGCGCGTGAAACCCAACGTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCAc                         <  2:6201253/151‑1 (MQ=11)

                                                                                            cTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCAcc                        >  1:5760533/1‑151 (MQ=255)

                                                                                            cTATCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCAcc                        <  2:1629527/151‑1 (MQ=11)

                                                                                              aTCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCgg                      >  1:3190357/1‑151 (MQ=255)

                                                                                              aTCGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCgg                      <  1:6035027/151‑1 (MQ=11)

                                                                                                ccaGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGaa                    <  2:5172622/149‑1 (MQ=11)

                                                                                                cGAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGaa                    <  1:3267159/151‑1 (MQ=255)

                                                                                                 gAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAAt                   <  1:1236536/151‑1 (MQ=255)

                                                                                                 gAGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAAt                   <  1:3004323/151‑1 (MQ=11)

                                                                                                  aGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATa                  <  1:895746/151‑1 (MQ=255)

                                                                                                  aGCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATa                  <  2:5450293/151‑1 (MQ=11)

                                                                                                   gCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATac                 <  1:6332278/151‑1 (MQ=255)

                                                                                                   gCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATac                 <  1:4126847/151‑1 (MQ=11)

                                                                                                   gCTGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATac                 <  1:4040139/151‑1 (MQ=11)

                                                                                                     tGACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATacac               >  2:1542868/1‑151 (MQ=255)

                                                                                                      gACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATACAcc              >  2:4176884/1‑151 (MQ=11)

                                                                                                      gACCACTACTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGGGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGGGAGGCACCGGAATACAcc              >  2:818033/1‑151 (MQ=14)

                                                                                                             acTGCGCGCGTGAAGCCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGt       <  2:5506357/151‑1 (MQ=255)

                                                                                                             acTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGt       <  2:6080269/151‑1 (MQ=255)

                                                                                                             acTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGt       >  1:2849761/1‑151 (MQ=255)

                                                                                                             acTGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGt       >  1:1775947/1‑151 (MQ=255)

                                                                                                               tGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATACACCCTGGGGTTc     <  2:324087/151‑1 (MQ=11)

                                                                                                               tGCGCGCGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGCTGTGGTTCAACATCTTATCGCTCAACACGGCCTACAACAGCCTGCAGAAGAGCGACGCACCGGAATACACCCTGGGGTTc     >  1:5363297/1‑151 (MQ=11)

CTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCACAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACGGTGTCTATCGAGCTGACCACCACTGCGCGTGTGAAACCCAACTTCCTTGGGTTGCTCACCTCCGGCGGTGGTGGTGGTTTAAACGCAGGGATGTTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGTGATGCACCGGAATACACCCTGGGGTTCGCT  >  CP009974/5597013‑5597277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`