| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 139,240 | G→T | intergenic (+242/+57) | RPPX_00595 → / ← RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 139,240 | 0 | G | T | 98.7% | 1109.6 / ‑3.6 | 319 | intergenic (+242/+57) | RPPX_00595/RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/4); new base T (159/153); total (161/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.98e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 320 total aligned reads displayed.
CTGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCAGA > CP009974/139092‑139390 | tgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTATGAGCGGGGTTACCCGCGAAGAGGCCGTGCctga > 2:641410/1‑150 (MQ=255) tgGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCctgc > 2:1456799/1‑151 (MQ=255) cccAATTTCCTCCCGCCGTTCACCGGCACCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCctgctg < 2:1653553/150‑1 (MQ=17) ccAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCctgctcc > 2:577416/1‑149 (MQ=255) ccAACTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCATACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTgg < 2:1851309/151‑1 (MQ=255) aaTTTCCACGCGCCGTCCACCGTCACCGCGGCTGCCGTATGCGCGGGTAACCCCGCTCCTACACCTATCGGGGGTGGACACCCATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGcc < 2:4133133/151‑1 (MQ=17) tctgcaggccgCTCAGCGTCTCCGCCACTACCGTATCCGCGGGTAAACCCGCTCCTACCCCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtc < 2:5506338/144‑1 (MQ=14) tCCACCCGCCGTTCACCGTTACCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtc < 2:2460785/151‑1 (MQ=255) ccACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtct < 2:3131876/151‑1 (MQ=255) ccACCCGCCGTTCACCGTTACCGCCGCTACCGTATGCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAAtct < 2:1278139/151‑1 (MQ=255) aCCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTcc < 2:1350002/151‑1 (MQ=255) cgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc > 2:1202062/1‑151 (MQ=255) cgccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCCGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCAcc > 2:1189736/1‑151 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccg < 1:237871/151‑1 (MQ=255) ccgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccg > 1:3825851/1‑151 (MQ=255) cgTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTcc > 1:3163276/1‑145 (MQ=255) gTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgcc > 1:1564563/1‑151 (MQ=255) ctgcACCGTCCCCGCCGCTACCGCATTCGCGGGTCAACCCGCTCCTACACCTATCGGGGGTGGACACACCTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgcc < 1:4897993/148‑1 (MQ=14) ttCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgccg > 1:4534442/1‑151 (MQ=255) ttCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACccgccg < 1:3454556/151‑1 (MQ=255) aCCGTTCCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTc < 2:4511467/151‑1 (MQ=255) aCCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTc < 1:5446154/151‑1 (MQ=255) cGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCAc < 1:6418587/151‑1 (MQ=255) ttACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCg > 1:1635873/1‑151 (MQ=255) tACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACAGt > 2:2255848/1‑151 (MQ=255) cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGTCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgc > 1:2035907/1‑151 (MQ=255) cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgc < 1:5980413/151‑1 (MQ=255) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgcc > 1:4688002/1‑151 (MQ=255) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAgcc > 1:6464443/1‑151 (MQ=255) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGCTCACCCCAgccg > 2:5410863/1‑151 (MQ=255) cgcgGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAAc > 2:443236/1‑151 (MQ=255) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt > 1:3284739/1‑151 (MQ=255) gggTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCt < 2:2213996/151‑1 (MQ=255) ggTAAACCCGCTCCTACACCTAGCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCtt < 1:5368659/151‑1 (MQ=255) agaagaCCCGCTCCTACACCTAACGGGGGTTGACACACATAGTTGTTTGGGCGCAGACAGTCGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCtt < 1:566574/146‑1 (MQ=21) tAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTc > 1:149755/1‑151 (MQ=255) aaaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCa > 2:2390670/1‑151 (MQ=255) aaCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCCAACCCTTTCaa > 2:3481573/1‑151 (MQ=255) aCCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCaaa < 1:2271179/151‑1 (MQ=255) cGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAgg > 1:1270008/1‑151 (MQ=255) gCTCCTGCACCTATCGGGGGTGGACCCACATTGGGGATGGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc < 2:3548404/151‑1 (MQ=255) gCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGc > 1:4060511/1‑151 (MQ=255) ctgcTACACCTATCGGGGGTGGACAGACATTGGTGACTGGGCCCCGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGcc < 1:950239/148‑1 (MQ=21) cTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGcc > 1:2078029/1‑151 (MQ=255) cTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTGACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGcc > 2:6153279/1‑151 (MQ=255) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGGGCGGGGTGACCCTCGCAGAGGCCGCGGCTGCTGGCCAAACACAACCCGCCCTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAACGccc > 2:6188248/1‑151 (MQ=21) tCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGccc > 2:27715/1‑151 (MQ=255) ccTACACCTACCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGcccc > 1:1789373/1‑151 (MQ=255) gacacCTATCGGGGGTGGACCCAAATTGGGGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCAt < 2:1148550/150‑1 (MQ=255) taccGGGGGTGGAGACACGTTGGTGATTGCCCGCAGGCCGTCGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCCCCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc < 2:5936044/148‑1 (MQ=21) tATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc > 1:2661977/1‑151 (MQ=255) tATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCAccc > 1:3589616/1‑151 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc > 1:3412699/1‑151 (MQ=255) gggggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc > 2:5446195/1‑151 (MQ=255) gggggTGGAAACACATTGGTGATTGGGCGCGGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCAc < 1:1907593/151‑1 (MQ=255) ggTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGac < 1:5195120/151‑1 (MQ=255) gACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGaccacc > 1:4834638/1‑151 (MQ=255) cacacaTTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCAcccc < 1:730966/151‑1 (MQ=255) ttGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGaaa < 1:4190502/151‑1 (MQ=255) tGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAAt > 1:2761264/1‑151 (MQ=255) ggTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAAtt > 1:5573257/1‑151 (MQ=255) tGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCg < 1:4436470/151‑1 (MQ=255) tgtGGGCCCGGGCCGGCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCa < 1:931912/149‑1 (MQ=255) tGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAc > 1:5314340/1‑151 (MQ=255) ggggCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAc < 2:813094/150‑1 (MQ=255) gcgcgcGGACCGTCACGTAGTAGCGGGTCTACCCGCGAAGAGGCCCAGCCTGCTGGCCAATCTCCACCCACCGTTCACCGTATCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAAATCGCAAcc < 1:2938189/149‑1 (MQ=37) gcAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctct < 1:2797596/151‑1 (MQ=255) gcAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctct > 1:5021600/1‑151 (MQ=255) gcAGGCCGGCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCctct < 2:4682826/151‑1 (MQ=255) gggCCGGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTc < 2:3237960/150‑1 (MQ=255) aGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTc < 1:1119904/151‑1 (MQ=255) aGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTc < 1:3928024/151‑1 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGca > 1:2215495/1‑151 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGca > 2:371140/1‑151 (MQ=255) ccGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGca > 2:3642524/1‑151 (MQ=255) cgtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcac > 2:5294094/1‑151 (MQ=255) cgtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCATTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcac > 2:2608848/1‑151 (MQ=255) cagcccgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcac < 2:2950233/145‑1 (MQ=255) gtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcaca < 1:5941674/151‑1 (MQ=255) gtcgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGcaca < 1:4604798/151‑1 (MQ=255) cgtGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaac > 1:5434312/1‑151 (MQ=255) gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCacaaca > 1:5132359/1‑151 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgc > 2:2639526/1‑151 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgc > 1:2877372/1‑151 (MQ=255) aGGAGCGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCTACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAgcgc > 2:3318195/1‑151 (MQ=255) ggAGCGGGTGTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGcc < 2:3994848/151‑1 (MQ=255) cGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGt < 1:352609/151‑1 (MQ=255) cGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGt < 1:1060922/151‑1 (MQ=255) cGGGTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGt < 2:4910801/151‑1 (MQ=255) gggTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTa < 1:2438710/151‑1 (MQ=255) ggTTTACCGGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCCCCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAg < 2:1770824/151‑1 (MQ=255) ggTTTACCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCACGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGCTAg > 2:3820119/1‑151 (MQ=255) aCCCGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACt > 1:4953547/1‑151 (MQ=255) ccGCGAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGt > 1:3108900/1‑151 (MQ=255) gcgAAGAGGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTc > 1:4113842/1‑151 (MQ=255) gAAGAGGCCGTGCCTGCTGGCCAATCTCCCCCCGCGGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa < 2:3906946/151‑1 (MQ=255) agagGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATg < 2:4188839/151‑1 (MQ=255) gagGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGc < 1:2520132/151‑1 (MQ=255) agGCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGcc > 1:3652675/1‑151 (MQ=255) gCCGTGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCtt > 1:4353109/1‑151 (MQ=255) | CTGCTGGCCAATTTCCACCCGCCGTTCACCGTTACCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTATCGGGGGTGGACACACATTGGTGATTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTAGCCGCCACCACTCAAACCCTTTCAAAAGGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAATGCCTTCAGA > CP009974/139092‑139390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |