| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,490,016 | G→A | intergenic (+31/‑317) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,490,016 | 0 | G | A | 84.1% | 863.4 / 111.3 | 355 | intergenic (+31/‑317) | RPPX_06570/RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base G (31/25); new base A (108/188); total (140/215) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.09e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.22e-01 | |||||||||||
Only 100 of 384 total aligned reads displayed.
GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 | gCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTacgacg < 2:2968232/151‑1 (MQ=255) gCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacggcc > 1:1299379/1‑149 (MQ=255) cGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTAcgacggcccg > 2:2591302/1‑147 (MQ=255) cGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTg < 1:1976047/151‑1 (MQ=255) ggATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgc > 2:1748973/1‑151 (MQ=255) ggATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTgc > 2:5765767/1‑151 (MQ=255) tATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGAt < 1:2643565/151‑1 (MQ=255) gTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAc < 1:3857674/151‑1 (MQ=255) tCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCAcc < 2:3638634/151‑1 (MQ=255) aGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAt < 2:3726049/151‑1 (MQ=255) ccTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACCACGGACTGCGCCCGATCCCCGATGTGTGCCCAcc > 2:893324/1‑150 (MQ=255) cTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTg < 1:2072177/151‑1 (MQ=255) cTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTg < 2:4642235/151‑1 (MQ=255) gcgcAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTa < 1:95182/151‑1 (MQ=255) gcAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGTCCGCGCCCGATCACCGATGTGTGCCCACTGTAgg > 1:2176081/1‑151 (MQ=255) aaaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCGGCGCCCGATCACCGATGTGTGCCCACCGTAgggg > 1:2515265/1‑149 (MQ=255) aaTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGc < 1:890742/151‑1 (MQ=255) aTGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGCTGTGTGCCCACTGTAGGGGCg > 2:3943012/1‑151 (MQ=255) tGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGc < 2:5552766/136‑1 (MQ=255) gctggctgAGTGCGGGCTGGATGCAGCCGGGATCGCGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt > 2:1086542/1‑150 (MQ=255) gctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt < 2:3873728/151‑2 (MQ=255) gctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCggt < 2:2287659/151‑2 (MQ=255) ctggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGGCTGCGCCCGATCACCGACGTGTGCCCCCTGGAGGAGCggct > 2:5067226/1‑149 (MQ=255) tggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGttt < 1:1086217/151‑1 (MQ=255) tggctgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGtt > 2:1401108/1‑151 (MQ=255) gggAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAc < 2:6517924/149‑1 (MQ=255) tgAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAcc < 1:2393715/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:1114698/151‑1 (MQ=255) gAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTAccc < 1:4114129/151‑1 (MQ=255) aGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCcg > 1:4792414/1‑151 (MQ=255) gCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGa < 1:766668/151‑1 (MQ=255) gCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATAc < 1:296314/151‑1 (MQ=255) ggATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACggt > 1:4643432/1‑149 (MQ=255) gCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcg < 1:1506141/151‑1 (MQ=255) gCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcg < 1:4285962/151‑1 (MQ=255) cGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggc < 2:6419688/151‑1 (MQ=255) cGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggc < 1:5861980/151‑1 (MQ=255) gggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGCGCGGTTTTACCCGCGAATACCATAgcggcggcg > 2:6226838/1‑151 (MQ=255) aggATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAgcggcggcg > 1:5482961/2‑151 (MQ=255) gATCGAGGCGTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGAc < 1:6449871/151‑1 (MQ=255) tCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAt < 2:4513005/97‑1 (MQ=255) tCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGAt > 1:4513005/1‑97 (MQ=255) gAGGCTTCGGGGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTg < 1:5944730/151‑1 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc > 1:6075469/1‑151 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAc > 2:5296276/1‑151 (MQ=255) gCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATCCGAGAGCGGCGCCGGCGGTGAAc > 1:4030162/1‑151 (MQ=21) cgtCGGTGAAGGCCGGCATGGCCAGGCCCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAAcg < 1:3164350/149‑1 (MQ=255) gTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGGACGGCggg > 1:3921227/1‑151 (MQ=255) aaGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGATCGGCGGATGa > 1:2085468/1‑151 (MQ=18) aGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGaa < 1:99637/151‑1 (MQ=255) gCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTgg > 1:2817533/1‑151 (MQ=255) gCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAAcgg > 2:3480314/1‑137 (MQ=17) cATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTGGCCGCGAATACGATAGGGGCGGCGCCAGTGAACGGCTGGTGTGTATTGGc > 1:1373031/1‑151 (MQ=17) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc < 2:1922428/151‑1 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGcc < 2:5908575/151‑1 (MQ=255) aTGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGACCACGGTGAACGGCGGGTGcaaagctggg > 2:2879514/1‑145 (MQ=17) ccAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagca < 1:625017/151‑1 (MQ=255) aGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagcagg < 1:4171995/151‑2 (MQ=255) gCTCGGGCTCTAGGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTg < 2:1150632/122‑1 (MQ=14) gCTCGGGCTCTAGGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTg > 1:1150632/1‑122 (MQ=14) cTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGa > 1:716437/1‑133 (MQ=14) cTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGa < 2:716437/133‑1 (MQ=14) tCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCg < 2:974217/151‑1 (MQ=255) ccGGGCTCTCGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCg < 2:54601/150‑1 (MQ=255) ccGGGCCCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCg < 1:5578533/150‑1 (MQ=11) cGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCgg < 1:5696892/151‑1 (MQ=255) gggCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTGTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAGAATTGGACTGCAGGCCCGGc > 1:1729398/1‑151 (MQ=14) ctctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCt < 1:4453681/151‑1 (MQ=11) ctctAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCTGGTGAAAATTGGCCAGCAGGCCCGGCCCt > 2:4453681/1‑151 (MQ=11) tgtAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGGGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCtt < 1:4910705/149‑1 (MQ=14) gcgaGGGCGCGGTCGCGAGAAAACCCGCGCCGACGACGGCAGGCGCACGATGACCGATGTGGACCCACTGAAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGTCCCGGCCCtt < 2:4254494/148‑1 (MQ=11) aGGGCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTcg < 1:1001396/151‑1 (MQ=255) gggCGCTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTcgc < 2:1576831/151‑1 (MQ=255) gcgcTTTCGCGGGTAAACCCGCTCCTACGGCGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAcc < 2:5347764/80‑1 (MQ=255) gcgcTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTAcc > 1:5347764/1‑80 (MQ=255) cgcTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCggg < 2:6116447/151‑1 (MQ=255) gcTTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGt < 2:2772768/151‑1 (MQ=255) tttCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGa > 2:2081392/1‑99 (MQ=34) tttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagca > 1:3499269/1‑129 (MQ=255) gcgGGTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAAccc < 2:2467657/151‑1 (MQ=11) ggTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCt < 1:2838710/151‑1 (MQ=255) ggTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCt < 1:341957/151‑1 (MQ=255) gTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTGAACCCGcgc > 1:3332326/1‑149 (MQ=1) gTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCcagca > 1:1887545/1‑121 (MQ=255) gTAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTc < 2:1244160/151‑1 (MQ=255) tAAACCCGCTGCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTcc < 2:1342455/151‑1 (MQ=255) tAAACCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTcc < 1:5112763/151‑1 (MQ=255) acaCCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCt < 2:3233212/149‑1 (MQ=255) aaaCCCGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCt < 1:688821/151‑1 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGC‑GGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggc < 2:4052943/151‑1 (MQ=255) cGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggc > 1:2982338/1‑151 (MQ=11) cGCTCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggc < 1:3589069/151‑1 (MQ=255) tCCTACGACGGCCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGTTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCggg < 1:1647442/151‑1 (MQ=255) cTACGGCGGGCTGCGCGCGATCGCCGATGTGTGCTCAATGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCt < 1:1555652/151‑1 (MQ=11) aCGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTAcggcggtcggc > 1:3056202/1‑146 (MQ=11) aCGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgc > 1:5428898/1‑151 (MQ=11) ggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGTGAAAATTGGCCTGCAGGCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTgcgc > 2:4970399/1‑151 (MQ=14) ggcggGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGACAACGGTGAACGGCGGGGGAAAATTGGCCGGCAGGCCCGGCCCTTTCGCGGGGGCGCCCGCTCCTACGGCGGGCTgcgc > 2:3034175/1‑151 (MQ=14) gcggGCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGcc < 2:245498/151‑1 (MQ=255) gcggCCTGCGCCCGATCACCGATGTGTGCTCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGcc < 2:478531/151‑1 (MQ=255) | GCTGCCGGATATCTATGTCGAGCATGCCAAGCCTGCGCAAATGCTGGCTGAGTGCGGGCTGGATGCAGCCGGGATCGAGGCTTCGGTGAAGGCTCGCATGGCCAGGCTCGGGCTCTAGGGCGCTTTCGCGGGTAAACCCGCTCCTACGGCGGGCTGCGCCCGATCACCGATGTGTGCCCACTGTAGGAGCGGGTTTACCCGCGAATACGATAGCGGCGGCGACGGTGAACGGCGGGTGAAAATTGGCCAGCAGCCCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGCGCC > CP009974/1489868‑1490166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |