BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	1,554,345	A→T	V354V (GTT→GTA)	tuf ←	elongation factor Tu

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	1,554,345	0	A	T	100.0%	363.8 / NA	140	V354V (GTT→GTA)	tuf	elongation factor Tu
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (63/77); total (63/77)

Only 100 of 140 total aligned reads displayed.

CAATCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATAACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACTTGGT  >  CP009974/1554198‑1554491

cAATCGGTCGAGTGATTACTCGATGATTTTTGTCTTAACTTCGGCGCCGAGGGTACGACCGCCTTCACGGATAGCGAACCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTCACAGTCATCTGACTGTTGTCACCTGGCATTAcc                                                                                                                                                 >  2:3442089/1‑151 (MQ=17)

cAATCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTAcc                                                                                                                                                 <  2:151625/151‑1 (MQ=255)

 aaTCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCa                                                                                                                                                <  1:5414985/151‑1 (MQ=255)

 aaTCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCa                                                                                                                                                >  1:3469125/1‑151 (MQ=255)

   tCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCAtt                                                                                                                                              <  1:6081617/151‑1 (MQ=255)

   tCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCAtt                                                                                                                                              >  2:5397886/1‑151 (MQ=255)

   tCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCAtt                                                                                                                                              <  2:3426658/151‑1 (MQ=255)

   tCGGTCGAGTAATTAATCGATGATTATTGCCAAAACGCAGGCGACGACGGTACGACCGCCTCAACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCAtt                                                                                                                                              <  1:2495845/151‑1 (MQ=14)

     ggTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTc                                                                                                                                            >  1:1685553/1‑151 (MQ=255)

      gTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCa                                                                                                                                           <  1:1685339/151‑1 (MQ=255)

       tCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCCGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCaa                                                                                                                                          >  2:5050296/1‑151 (MQ=255)

        cGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAAc                                                                                                                                         <  2:2868099/151‑1 (MQ=255)

         gAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACg                                                                                                                                        <  1:4975401/151‑1 (MQ=255)

         gAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACg                                                                                                                                        <  2:4892416/151‑1 (MQ=255)

             gATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCtt                                                                                                                                    <  2:5095627/151‑1 (MQ=255)

              aTTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTc                                                                                                                                   <  1:6403509/151‑1 (MQ=255)

              aTTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTc                                                                                                                                   >  1:5285178/1‑151 (MQ=255)

               ttACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTcc                                                                                                                                  <  1:1838755/151‑1 (MQ=255)

                 aCTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCgg                                                                                                                                <  1:515444/151‑1 (MQ=255)

                 aCTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCgg                                                                                                                                <  1:375728/151‑1 (MQ=255)

                   tCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCa                                                                                                                              <  2:3587600/151‑1 (MQ=255)

                   tCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCa                                                                                                                              >  2:2161004/1‑151 (MQ=255)

                    cGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAg                                                                                                                             <  1:4605906/151‑1 (MQ=255)

                    cGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAg                                                                                                                             <  2:2047781/151‑1 (MQ=38)

                     gatgatTTTTGCTACATCGTCGTCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCCTTGCGATGGTCTTGATCAGGGTAACAGTCATCTTAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGCCAGt                                                                                                                            >  2:5576363/1‑151 (MQ=11)

                     gatgatTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGt                                                                                                                            >  2:2831303/1‑151 (MQ=38)

                        gatTTTTTCCTCAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTcc                                                                                                                         >  2:2718535/1‑150 (MQ=255)

                          tttttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCa                                                                                                                       <  1:4396371/151‑1 (MQ=25)

                           ttttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAg                                                                                                                      <  1:1555917/151‑1 (MQ=18)

                            tttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGt                                                                                                                     <  1:6009332/151‑1 (MQ=18)

                            tttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGt                                                                                                                     <  1:616423/151‑1 (MQ=25)

                            ttggCCACAGCGCCGGCGCCGACGGTACGACCGCATTCACGGATAGCGAGTCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGt                                                                                                                     <  2:6278544/148‑1 (MQ=11)

                             ttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGtt                                                                                                                    <  1:2459411/151‑1 (MQ=21)

                             ttGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGtt                                                                                                                    <  1:5769902/151‑1 (MQ=18)

                               ggcacaACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGACGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTAc                                                                                                                  <  2:4675404/149‑1 (MQ=12)

                                ccACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTAcc                                                                                                                 <  1:5682871/151‑1 (MQ=18)

                                ccACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTAcc                                                                                                                 <  2:2229515/151‑1 (MQ=18)

                                 cacaACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCg                                                                                                                >  1:1840332/1‑151 (MQ=17)

                                 cacaACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCg                                                                                                                >  1:3727340/1‑151 (MQ=17)

                                 cacaACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCg                                                                                                                <  1:5469300/151‑1 (MQ=17)

                                                                                                         cTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCcttct                                        <  1:4168689/151‑1 (MQ=11)

                                                                                                          ttGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCcttctt                                       >  2:4822075/1‑151 (MQ=14)

                                                                                                          ttGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCcttctt                                       >  1:1044294/1‑151 (MQ=14)

                                                                                                          ttGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCcttctt                                       >  1:3072412/1‑151 (MQ=14)

                                                                                                           tGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCttcttc                                      >  1:534676/1‑151 (MQ=14)

                                                                                                           tGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCttcttc                                      <  1:3643011/151‑1 (MQ=14)

                                                                                                           tGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGCGTGACGGCCGCCttcttc                                      >  2:3064312/1‑151 (MQ=14)

                                                                                                              tCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTcttcctt                                   <  1:5406001/151‑1 (MQ=17)

                                                                                                               cAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTcttccttc                                  <  2:617641/151‑1 (MQ=17)

                                                                                                               cAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTcttccttc                                  >  1:4557794/1‑151 (MQ=17)

                                                                                                                aGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCg                                 >  1:5464819/1‑151 (MQ=14)

                                                                                                                aGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCg                                 <  1:757275/151‑1 (MQ=17)

                                                                                                                aGGGTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCg                                 <  2:6020259/151‑1 (MQ=17)

                                                                                                                 gggTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGa                                >  2:3944713/1‑151 (MQ=17)

                                                                                                                  ggTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGAc                               <  1:2898746/151‑1 (MQ=17)

                                                                                                                  ggTAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGAc                               >  1:3133353/1‑151 (MQ=14)

                                                                                                                    tAACAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAg                             <  2:4600075/151‑1 (MQ=17)

                                                                                                                     aaCAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAgg                            >  2:334718/1‑151 (MQ=17)

                                                                                                                     aaCAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAgg                            <  2:3094519/151‑1 (MQ=17)

                                                                                                                     aaCAGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAgg                            <  2:4842166/151‑1 (MQ=17)

                                                                                                                       aaGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTCCCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGAc                          <  2:1687748/150‑1 (MQ=17)

                                                                                                                        aGTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACg                         <  1:4427365/151‑1 (MQ=17)

                                                                                                                         gTCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGt                        >  2:6184958/1‑151 (MQ=17)

                                                                                                                          tCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTa                       <  1:6325679/151‑1 (MQ=17)

                                                                                                                          tCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTa                       <  2:3633037/151‑1 (MQ=17)

                                                                                                                          tCATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTa                       <  1:735894/151‑1 (MQ=17)

                                                                                                                           cATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAg                      >  1:4172891/1‑151 (MQ=14)

                                                                                                                           cATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAg                      <  2:1022853/151‑1 (MQ=17)

                                                                                                                           cATCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAg                      >  1:4850507/1‑151 (MQ=17)

                                                                                                                             tCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGAc                    >  2:2434634/1‑151 (MQ=17)

                                                                                                                             tCTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGAc                    >  2:5074466/1‑151 (MQ=17)

                                                                                                                              cTGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACt                   >  2:3940909/1‑151 (MQ=14)

                                                                                                                               tGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACtt                  <  2:320205/151‑1 (MQ=17)

                                                                                                                               tGAATGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACtt                  <  1:5068961/151‑1 (MQ=17)

                                                                                                                                 aaTGTTGTCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCt                <  2:201248/151‑1 (MQ=17)

                                                                                                                                 aaTGTTGTCACCTCGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCt                <  1:6301286/151‑1 (MQ=17)

                                                                                                                                   tgttgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTATCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGc              >  2:6218589/1‑151 (MQ=17)

                                                                                                                                   tgttgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGc              <  1:883267/151‑1 (MQ=17)

                                                                                                                                    gttgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCg             <  1:1366418/151‑1 (MQ=17)

                                                                                                                                    attgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCg             >  1:2606345/2‑151 (MQ=17)

                                                                                                                                      tgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACCGGACGTAGACTTCTGCGGt           >  2:5300651/1‑151 (MQ=14)

                                                                                                                                      tgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGt           >  2:4921675/1‑151 (MQ=14)

                                                                                                                                      tgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGt           >  2:1641492/1‑151 (MQ=14)

                                                                                                                                      tgtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGt           <  2:4317212/151‑1 (MQ=17)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          <  2:3449160/151‑1 (MQ=14)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          <  2:287244/151‑1 (MQ=17)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          >  2:5505479/1‑151 (MQ=14)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          >  2:2180674/1‑151 (MQ=14)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          >  2:5505353/1‑151 (MQ=17)

                                                                                                                                       gtCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGCGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTg          <  1:4931969/151‑1 (MQ=17)

                                                                                                                                        tCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGa         >  2:2546649/1‑151 (MQ=17)

                                                                                                                                        tCACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGa         >  2:723704/1‑151 (MQ=14)

                                                                                                                                         cACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGaa        <  1:5397886/151‑1 (MQ=17)

                                                                                                                                         cACCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGaa        >  1:4653585/1‑151 (MQ=17)

                                                                                                                                          aCCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAAc       >  1:4284682/1‑151 (MQ=17)

                                                                                                                                          aCCTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAAc       >  1:2279240/1‑151 (MQ=14)

                                                                                                                                           ccTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACt      <  1:3881760/151‑1 (MQ=14)

                                                                                                                                           ccTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACt      >  1:2826663/1‑151 (MQ=17)

                                                                                                                                            cTGGCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACtt     >  2:6382316/1‑151 (MQ=14)

                                                                                                                                              ggCATTACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACTTgg   >  2:2447332/1‑151 (MQ=17)

CAATCGGTCGAGTGATTACTCGATGATTTTTGCCACAACGCCGGCGCCGACGGTACGACCGCCTTCACGGATAGCGAAGCGCAGACCGTCTTCCATTGCGATGGTCTTGATCAGGGTAACAGTCATCTGAATGTTGTCACCTGGCATAACCATTTCAACGCCTTCCGGCAGTTCGCAGTTACCGGTCACGTCAGTGGTACGGAAGTAGAACTGTGGACGGTAGCCTTTGAAGAACGGAGTGTGACGGCCGCCTTCTTCCTTCGACAGGACGTAGACTTCTGCGGTGAACTTGGT  >  CP009974/1554198‑1554491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`