Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 382,164 T→C intergenic (+300/+229) RPPX_01535 → / ← RPPX_01540 guanine permease/5‑hydroxyisourate hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009974382,1640TC98.2% 909.3 / 3.0 339intergenic (+300/+229)RPPX_01535/RPPX_01540guanine permease/5‑hydroxyisourate hydrolase
Reads supporting (aligned to +/- strand):  ref base T (3/3);  new base C (158/174);  total (161/178)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 340 total aligned reads displayed.

GCGCCAAGGCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCA  >  CP009974/382016‑382311
                                                                                                                                                    |                                                                                                                                                   
     aaGGCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCAccc                                                                                                                                              <  1:4241519/151‑1 (MQ=255)
     aaGGCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCAccc                                                                                                                                              >  1:4894849/1‑151 (MQ=255)
     aaGGCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCAccc                                                                                                                                              <  1:4417983/151‑1 (MQ=255)
       ggCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACccgc                                                                                                                                            <  2:4358304/151‑1 (MQ=255)
          aTTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGGAGGAGCGGGCTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACccgcccc                                                                                                                                         >  2:6072672/1‑149 (MQ=255)
             cACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCa                                                                                                                                      <  1:5067716/151‑1 (MQ=255)
              aCGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCTCGAAGAGGCCGTCCCTGCTGTCCAATCTCCACCCGCCGATCAc                                                                                                                                     >  1:196470/1‑151 (MQ=255)
               cgcgCAAATCCACCTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCAcc                                                                                                                                    <  2:845285/151‑2 (MQ=255)
                 cgcAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGt                                                                                                                                  <  1:3515220/151‑1 (MQ=255)
                  gcAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGtt                                                                                                                                 >  1:2481872/1‑151 (MQ=255)
                   cAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGtt                                                                                                                                        <  1:6438065/143‑1 (MQ=255)
                    aaaTCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGATgc                                                                                                                               >  2:3889972/1‑151 (MQ=255)
                    aaaTCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgc                                                                                                                               <  2:2615885/151‑1 (MQ=255)
                        cccACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgctgcc                                                                                                                           <  1:6126301/151‑1 (MQ=255)
                        cccACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgctgcc                                                                                                                           <  1:4312690/151‑1 (MQ=255)
                           aCTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCtgccgcc                                                                                                                        <  2:4287651/151‑2 (MQ=255)
                            cTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCtgccgccc                                                                                                                       >  1:463427/1‑149 (MQ=255)
                            cTGCGGCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCtgccgcca                                                                                                                       <  2:1549641/151‑3 (MQ=21)
                              gCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCAcc                                                                                                                     >  1:5679950/1‑151 (MQ=255)
                                gTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGt                                                                                                                   <  1:3610054/151‑1 (MQ=21)
                                      tGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgc                                                                                                             <  1:1014408/151‑1 (MQ=21)
                                      tGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTcgc                                                                                                             <  2:3796618/151‑1 (MQ=21)
                                         cccGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAACCTCCACCCGCCGTTCACCGCTCCTCCCGCCACCGTCTCCGCggc                                                                                                          >  2:4835708/1‑150 (MQ=18)
                                          ccGAAACAGACGTAGGAGCCACCATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGGATTCGCgggg                                                                                                         >  2:5808973/1‑150 (MQ=18)
                                           cGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTa                                                                                                        <  2:1638422/151‑1 (MQ=18)
                                                cAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAAccc                                                                                                   >  2:3375458/1‑151 (MQ=255)
                                                cAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAAccc                                                                                                   <  1:5203257/151‑1 (MQ=18)
                                                  gACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTa                                                                                                        >  2:5027404/1‑144 (MQ=18)
                                                  gACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGc                                                                                                 <  1:3120634/151‑1 (MQ=18)
                                                  gACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGGATTCGCGGGTAAACCCGc                                                                                                 >  1:1585040/1‑151 (MQ=18)
                                                   aCGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCt                                                                                                <  2:3731732/151‑1 (MQ=255)
                                                      tAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                             >  2:646370/1‑151 (MQ=255)
                                                      tAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                             <  2:5093263/151‑1 (MQ=17)
                                                       aGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                            >  1:74610/1‑151 (MQ=17)
                                                         gggCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTaca                                                                                          <  2:1128221/149‑1 (MQ=14)
                                                            ccACTATCGTGCGGAGCAGTGGAAATGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCGCTGGGGGCCAATCTCCACCGGCCGTTCACCGTTGCTGCCGCCACCGTATTCGAGGGTAAACCCGCTCCTACACCt                                                                                       <  2:5516199/151‑1 (MQ=14)
                                                              aCTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGa                                                                                     >  1:4143604/1‑151 (MQ=17)
                                                                tATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATc                                                                                   <  2:1071571/151‑1 (MQ=255)
                                                                 aTCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCg                                                                                  >  1:4986601/1‑151 (MQ=17)
                                                                    ttGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggtg                                                                               <  1:2365151/151‑1 (MQ=17)
                                                                      gCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggtggt                                                                             <  2:2588357/151‑1 (MQ=255)
                                                                      gCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCggtggt                                                                             <  1:3788574/151‑1 (MQ=255)
                                                                       cTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCGAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTGGTCGGAAAACCCGCGCCTACGCCTGAAGGgtggtg                                                                            >  2:1939489/1‑151 (MQ=17)
                                                                         tAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGCTCGGTGGTGGa                                                                          >  2:4435504/1‑151 (MQ=17)
                                                                          aaCATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGac                                                                         >  2:1310313/1‑151 (MQ=17)
                                                                             aTTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGacaca                                                                      >  2:4542344/1‑151 (MQ=17)
                                                                                ggAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACAt                                                                   <  2:4143604/151‑1 (MQ=17)
                                                                                  gaaGGCCTGCGCGGTCCCGCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTGCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGTGGGTAAGCCCGCTCCTACACCTGATCGGTGGTGGACACACATGt                                                                 <  2:4598810/150‑1 (MQ=17)
                                                                                   aaGGCCTGCGCGGTCCCCCCGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCCCCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACCTGATCGGTGGTGGACACACATGTc                                                                <  2:3194730/151‑1 (MQ=17)
                                                                                    aGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCg                                                               >  2:426207/1‑151 (MQ=255)
                                                                                     ggCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCgg                                                              <  2:3036041/151‑1 (MQ=255)
                                                                                      gCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCggg                                                             <  1:6522169/151‑1 (MQ=17)
                                                                                       ccTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCgggg                                                            >  1:6259766/1‑151 (MQ=17)
                                                                                         tGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACCCATGTCGGGGGt                                                          >  2:1193067/1‑151 (MQ=17)
                                                                                          gcgcGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGtt                                                         >  1:3973972/1‑151 (MQ=255)
                                                                                          gcgcGGTCCCCCAGTAGGAGAGGGTTTCCCCGCGAAGCGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGtt                                                         <  1:4071877/151‑1 (MQ=17)
                                                                                          gcgcGGGCCCCCCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCCTGCTGACCAAGCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGtt                                                         <  2:4102476/151‑1 (MQ=17)
                                                                                           cgcgGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTg                                                        <  1:5727795/151‑1 (MQ=255)
                                                                                            gcgGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTgg                                                       <  2:1985819/151‑1 (MQ=17)
                                                                                               gTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGca                                                    <  1:858515/151‑1 (MQ=17)
                                                                                                cccccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGcac                                                   <  1:1655789/150‑1 (MQ=255)
                                                                                                  cccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAg                                                 >  1:2550838/1‑151 (MQ=17)
                                                                                                  cccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAg                                                 <  1:4708856/151‑1 (MQ=17)
                                                                                                   ccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGCTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGCCGGGGGCTGGGCACAgg                                                >  1:3266422/1‑151 (MQ=17)
                                                                                                    cccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGc                                               >  1:4965663/1‑151 (MQ=17)
                                                                                                       gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGCTGGCCAATCTCCACCCGCCGGTCACCGTTGCTGCCGCCACCGTATTCCCGGGTAAACTCGCGCCTACCCCGGATCGCCGGTAGACACACATGCCGGGGGTTGCGCACCGGCcgc                                            >  2:1767207/1‑150 (MQ=14)
                                                                                                          ggAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACTGTTgacgcc                                                                                                                           <  2:916688/69‑1 (MQ=255)
                                                                                                             gCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTa                                      <  1:154422/151‑1 (MQ=17)
                                                                                                                 gTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAg                                  <  2:2239478/151‑1 (MQ=255)
                                                                                                                  tttACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGc                                 <  1:4205462/151‑1 (MQ=255)
                                                                                                                  tttACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGCCGGGGGTTGGGCACAGGCCGTCGTGTCGGatc                                 >  2:2340722/1‑149 (MQ=17)
                                                                                                                   ttgcccGGGAAGAGGCGGGCCCGGCGGGGCCAGCGCAGCGCGCCGTTCTCCGTTGCTGCCGCCCCCGGATTCGCGGGTAAGCCGGCTCCTCCACCTGCTCGGTGGTGGACACCCCTGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCg                                <  2:5411830/148‑1 (MQ=9)
                                                                                                                   ttACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCGCCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCg                                <  2:153017/151‑1 (MQ=255)
                                                                                                                   ttACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCg                                >  1:3322978/1‑151 (MQ=255)
                                                                                                                    tACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCgg                               >  1:5865604/1‑151 (MQ=17)
                                                                                                                      cccGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCgggg                             >  1:2250651/1‑150 (MQ=17)
                                                                                                                        cgcgAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGttt                           <  1:2280933/151‑1 (MQ=17)
                                                                                                                         gcgAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTa                          >  1:6011299/1‑151 (MQ=17)
                                                                                                                          cgAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAc                         <  2:6294471/151‑1 (MQ=255)
                                                                                                                           gAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAcc                        >  1:5285799/1‑151 (MQ=17)
                                                                                                                           gAAGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAcc                        >  2:3313883/1‑151 (MQ=17)
                                                                                                                            aaGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAccc                       <  1:1434965/151‑1 (MQ=17)
                                                                                                                            aaGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAccc                       <  1:2802810/151‑1 (MQ=255)
                                                                                                                            aaGAGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTAccc                       <  1:2613653/151‑1 (MQ=255)
                                                                                                                              gagGCCGGCCCTGCTGGCCCATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCcgc                     <  2:212640/151‑1 (MQ=17)
                                                                                                                              gagGCCGGCCCTGCTGGCCACTCCCCACCCGCCGTTCCCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCcgc                     <  2:5682320/151‑1 (MQ=17)
                                                                                                                              gagCCCGGCCCGGCTGGCCAATCTGCCCCCGCCGTGCGCCGTTGCTGCCGCCACCGTATTCGCGGGTAAGCCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCcgc                     <  2:1021643/151‑1 (MQ=14)
                                                                                                                                  ccggccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAag                 >  2:278595/1‑151 (MQ=14)
                                                                                                                                  ccggccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGCAGGAGCGGGTTTACCCGCGAag                 <  1:2907278/151‑1 (MQ=255)
                                                                                                                                   cggccCTGCTGGCTATTCTCCACCCGCCGTTCTCCGTTGCTGCCGCCACCGTGTTGGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAaga                <  1:5385276/151‑1 (MQ=14)
                                                                                                                                    gggtgggctgGTCAATGGCCAGCCGCCGTTCGCCGCTGCTGCCGGCACCGTATTCGCGGGTAAACCCGCTCCCACACCTGAGCGGTGGTGGACACACGTGTCGGGGGTTGGGCGCAGGCCGTCGTGTAGGAGCGGGTTTCCCCGCGAagag               <  2:2488168/145‑1 (MQ=14)
                                                                                                                                    ggccCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGt                                                                                                         <  1:6318032/61‑1 (MQ=35)
                                                                                                                                    ggccCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGt                                                                                                         >  2:6318032/1‑61 (MQ=37)
                                                                                                                                     gccCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAgg              <  1:3561344/151‑1 (MQ=255)
                                                                                                                                        ctgctgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTATGAGCGGGTTTACCCGCGAAGAGGCCg           >  1:2062150/1‑151 (MQ=14)
                                                                                                                                         tgctgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg          >  1:6280197/1‑151 (MQ=14)
                                                                                                                                         tgctgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg          >  2:4688995/1‑151 (MQ=14)
                                                                                                                                            tgGCCAATCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcac       >  1:2103502/1‑151 (MQ=255)
                                                                                                                                             ggCCCATCTCCACCCGCCGTGCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAGCCCGCTCCTACACCTGAGCGGTGGTGGACACACATGTCGGGGGTGGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca      <  1:1302581/151‑1 (MQ=17)
                                                                                                                                                 aaTCTCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGTGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCa  <  1:646370/151‑1 (MQ=14)
                                                                                                                                                    |                                                                                                                                                   
GCGCCAAGGCATTCACGCGCAAATCCCACTGCGTCAAATGGCCCGAAACAGACGTAGGAGCCACTATCTTGCTTAACATTGGAAAGGCCTGCGCGGTCCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCGGTGGTGGACACACATGTCGGGGGTTGGGCACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCA  >  CP009974/382016‑382311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: