| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,897,654 | T→C | intergenic (‑5432/‑3165) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,897,654 | 0 | T | C | 75.7% | 3277.4 / inf | 3012 | intergenic (‑5432/‑3165) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (402/330); new base C (1182/1093); total (1586/1426) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 3016 total aligned reads displayed.
CGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTA > CP009974/1897504‑1897803 | ggTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCgag > 2:454059/1‑151 (MQ=18) cgTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCgag > 2:2677964/2‑151 (MQ=18) gTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCgaga > 1:2399296/1‑151 (MQ=37) gTCAGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTAGCCgaga < 1:6459741/151‑1 (MQ=17) tCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGaa < 2:6144298/151‑1 (MQ=18) cAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAAc < 2:5174008/151‑1 (MQ=21) gaaggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACg > 1:2636100‑M2/63‑151 (MQ=255) aGCGGCGCAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACg < 2:2154922/151‑1 (MQ=25) aGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACg < 1:219058/151‑1 (MQ=18) aGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACg < 1:6258426/151‑1 (MQ=18) aGCGGCGCAGATGCATACAAGTTCGACAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACg < 2:3280457/151‑1 (MQ=18) gcggcgCTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGt < 1:1297793/151‑1 (MQ=18) gcggcgCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCCGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGt > 1:39555/1‑151 (MQ=18) cggcgCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTc > 2:2850556/1‑151 (MQ=18) aggcgcggatgtcggcaagttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCCCGGCCGACCAGACTTCGGTGGCCGGGAACGTc > 2:4019483‑M2/61‑151 (MQ=255) gcgcTGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCaa < 1:5921035/151‑1 (MQ=18) cAGATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAAcc < 2:1479970/151‑1 (MQ=21) tgATGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAAccg < 1:6358311/150‑2 (MQ=17) aGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCaaaccg > 2:1010550/1‑147 (MQ=12) gATTCATGGAAGTTCGAAAACCTGAACCTGGACAAAACCCCCGTCAGCACCAAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCAATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAAccga < 1:700241/151‑3 (MQ=18) aTGCGTGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCaaaccgac < 1:2028676/151‑7 (MQ=18) gCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt < 1:5682406/151‑1 (MQ=9) tGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCa < 2:3836088/151‑1 (MQ=18) tGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAACACCGAGGTGACCGACGAGCCAGGCACTCCAGGCAGCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCa > 2:1681138/1‑151 (MQ=18) ggAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCAc > 2:2044188/1‑151 (MQ=9) aaGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGGCAAACCGACCTTCACCg > 2:2262263/1‑151 (MQ=17) gTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACATCGTCAAAGTCACTATTACTGCTGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACtgtg < 2:2991183/151‑1 (MQ=9) gTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTg > 1:3597665/1‑151 (MQ=14) ttcgaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGc > 1:1406771‑M2/42‑151 (MQ=255) ttCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGc > 1:1533124/1‑151 (MQ=18) ttCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTCCACCGTGc > 2:4803869/1‑151 (MQ=14) ttCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGc < 2:2525160/151‑1 (MQ=18) cGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCAc < 1:3375221/151‑1 (MQ=14) cGAAAACCTGAACCTGGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCAc < 1:5473475/151‑1 (MQ=17) gaacagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGCaca < 2:4185103‑M2/113‑2 (MQ=255) aaaaCCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGt > 1:3284458/1‑151 (MQ=14) aaaCCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTc > 1:6129316/1‑151 (MQ=14) cagctgacgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGCACATCa < 2:5932357‑M2/116‑1 (MQ=255) acctgaacctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCaa < 2:4321292/151‑1 (MQ=17) cctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAAc > 1:3004069/1‑151 (MQ=11) ctgaacctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAAcc < 2:727234/151‑1 (MQ=17) tgaacctgGACAAGACTCCAGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGCGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCa > 2:1940203/1‑151 (MQ=21) acgctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGCACAtcaacaccg > 1:3476945‑M2/30‑147 (MQ=255) aacctgGACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGc < 1:4296424/151‑1 (MQ=14) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 1:5102849/151‑1 (MQ=17) acctgGACAAGACCCCGGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 2:3763812/151‑1 (MQ=17) acctgGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 1:4136708/151‑1 (MQ=14) acctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGcc < 1:2537942/151‑1 (MQ=17) cctgGACAAGACCCCGGTCAGCACTACCGTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCg > 2:5521221/1‑151 (MQ=14) cctgGACAAAACCCCCGTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCg < 1:3835824/151‑1 (MQ=17) ctggacaagacgccggtcagcacgtcGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACGTTCACCGTGCacatcaacaccgccc > 1:3697406‑M2/27‑144 (MQ=255) ggACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCTGGCACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTg < 1:897329/151‑1 (MQ=14) ggACAAGACCCCCGTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCtc > 2:5319098/1‑150 (MQ=14) gaccccggTCAGCACCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCAc < 2:5085374/144‑1 (MQ=17) aacccccgTCAGCACCGAGGTAACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCAc > 1:1638073/8‑151 (MQ=17) accccggTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACg < 1:1169650/145‑1 (MQ=11) aGTCAGCACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTg > 2:2396546/1‑151 (MQ=18) cAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTc > 2:872751/1‑151 (MQ=11) aGCACCGAGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCg < 2:493684/151‑1 (MQ=11) cACCGAGGTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTg > 1:2880878/1‑151 (MQ=17) aCCGAGGTGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGCCCTGATCGTGa > 2:4446086/1‑151 (MQ=17) ccaaGGTGACCGACACGCCAGGTACGCCGAGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGAc < 1:4564268/148‑1 (MQ=11) gAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGAccc < 2:3636301/151‑1 (MQ=11) aGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATCTGGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTGAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCt > 2:5599070/1‑151 (MQ=11) ggTGACCCCCGAGCCAGGAACGACGGGCAACGAAGACGATCTAGTCAAGGTCACCATCACGGCCGACCAGACCTCGGTAGCCGAGAACGTCAAACCGACCTTCACCGTGCCCGTCAACCCGCCGCTGGCCCACGACTTGGTCGTGACCCTg < 1:1917429/151‑1 (MQ=11) ggTCACCGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTg < 1:1798532/151‑1 (MQ=14) tGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg < 1:3126136/151‑1 (MQ=14) tGACCGACGAGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAg < 2:2758002/151‑1 (MQ=14) gACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAAGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGc < 1:4442590/151‑1 (MQ=11) ccGACGAGCCAGGTACCCCGGGTAACGAAGGCGATATCATCACGGGCACCATCACGGCCGACCAGAACTCGGTGGCTGAGAACGTCAAACCGACTGACACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGcaa > 2:6343780/1‑151 (MQ=17) ccGACGAGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGcaa < 2:1813956/151‑1 (MQ=11) gcgaGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaa < 2:6242890/150‑1 (MQ=14) acgaGCCAGGCACTCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGcaacaa > 2:3426002/1‑151 (MQ=17) cgaGCCAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaat < 1:1006142/151‑2 (MQ=14) gaGCCAGGTACCCCAGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGcaacaatg > 2:6045921/1‑149 (MQ=11) cAGGCACCCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGcaacaatgctca < 1:4636375/151‑7 (MQ=14) gcaccccGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGt < 2:5687799/146‑1 (MQ=11) gTACCCCGGGTAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGt < 2:1118694/151‑1 (MQ=17) tccaggCAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCCGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAcc > 2:4100095/5‑151 (MQ=17) cGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCAt < 2:5438047/151‑1 (MQ=11) cGGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCCACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCAt > 2:6505170/1‑151 (MQ=11) ggCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCa > 1:5365137/1‑151 (MQ=14) cAACGAAGGCGATATCATCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg > 2:3127365/1‑151 (MQ=255) aaCGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCaa < 1:4867985/149‑1 (MQ=14) gAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCg < 2:4677496/151‑1 (MQ=11) gCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGa < 2:1587233/151‑1 (MQ=11) gCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGctggcga > 1:602409/1‑145 (MQ=11) gacctggtcaAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGaaa > 1:2277539/8‑151 (MQ=11) catcaAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAgt < 2:352507/151‑2 (MQ=11) gtcaAGGTCACCATCACGGCCGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAgcg > 2:1221292/2‑151 (MQ=11) caAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAgtgcg < 1:4758850/151‑1 (MQ=11) aaGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGcc > 2:5795130/1‑117 (MQ=14) aaGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGcc < 1:5795130/117‑1 (MQ=14) cACCATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGATCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTac < 2:1342545/151‑1 (MQ=14) cATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAcc < 1:808537/151‑1 (MQ=11) cATCACCGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTAACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAcc > 1:4038312/1‑151 (MQ=11) aTCACGGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACAccc > 1:5578910/1‑151 (MQ=11) tCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGTGCGCCGTACACCCa < 1:2760587/151‑1 (MQ=255) cACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACTTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGTGCGCCGTACACCCac < 1:5227423/151‑1 (MQ=11) ccAGACCTCGGTGGCTGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCacgatgcgcaa < 1:4977705/151‑8 (MQ=11) | CGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACTCCAGTCAGCACCGAGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGATATCATCAAGGTCACCATCACGGCCGACCAGACCTCGGTGGCTGAGAACGTCAAGCCAACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGACGCACAGGGCGATGACGTCTA > CP009974/1897504‑1897803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |