| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,920,803 | T→A | intergenic (‑432/+123) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,920,803 | 0 | T | A | 97.4% | 239.6 / ‑4.1 | 114 | intergenic (‑432/+123) | RPPX_08560/RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| Reads supporting (aligned to +/- strand): ref base T (3/0); new base A (54/56); total (58/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAGG > CP009974/1920691‑1920950 | cTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgag > 1:3927399/1‑151 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGCTGTCGCTGGAAGTGGGGCGCACTATAATGGGATTCgaga > 2:1465645/1‑151 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 2:2855223/151‑1 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 2:6126431/151‑1 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 1:4873599/151‑1 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 1:5821978/151‑1 (MQ=2) ttGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCgaga < 2:1913893/151‑1 (MQ=2) ggAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCTTTCCGATGTCGCTGGAAGTGGGGCGCATTATACGGCGCTTCGAGAgg > 2:232995/1‑151 (MQ=2) gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAggg > 1:1748310/1‑151 (MQ=2) gAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAggg < 1:6005577/151‑1 (MQ=2) aaGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGc > 1:638951/1‑151 (MQ=2) aaGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGc > 1:2643515/1‑151 (MQ=2) gcgcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGt < 2:2918939/151‑1 (MQ=11) gcgcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGt < 2:4032767/151‑1 (MQ=2) cgcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTc < 2:4428118/151‑1 (MQ=2) cgcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATGATAAGGGGATTCGAGAGGGCGTc > 2:2514959/1‑151 (MQ=2) gcTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCa < 2:1201368/151‑1 (MQ=2) cTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCTATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCaa > 2:1739571/1‑151 (MQ=2) cTGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCaa > 1:611301/1‑151 (MQ=2) tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCaa > 2:2521693/1‑150 (MQ=2) tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCaa < 1:2521693/150‑1 (MQ=2) tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAc > 1:4154449/1‑151 (MQ=2) tGTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAc < 1:5317769/151‑1 (MQ=2) gTCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAAcc < 2:638550/151‑1 (MQ=11) tCAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCt > 1:173209/1‑151 (MQ=2) cAACCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCtt < 2:1673337/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt < 2:425745/151‑1 (MQ=2) aaCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCttt > 1:5513620/1‑151 (MQ=2) aCCATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTa > 1:1515934/1‑151 (MQ=2) ccATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa < 1:3548520/151‑1 (MQ=2) ccATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa < 1:81832/151‑1 (MQ=2) ccATCATCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTaa < 2:2910332/151‑1 (MQ=2) catcatCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAt > 2:684853/1‑151 (MQ=2) catcatCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAt > 1:3280911/1‑151 (MQ=2) catcatCTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAt > 2:3542561/1‑151 (MQ=2) atcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAtt < 1:406450/151‑1 (MQ=2) atcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAtt < 2:2715844/151‑1 (MQ=2) tcatcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAAttt < 2:5443525/151‑1 (MQ=2) atcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCa < 2:613995/151‑1 (MQ=2) atcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCa < 1:5552615/151‑1 (MQ=2) atcTCAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGC‑‑TTTCCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCa < 2:3325031/151‑1 (MQ=2) cAACCGCTTTCGATCATTCGACCGTAGCCCCTCCAGCTTT‑‑CCTTTC‑ACTACT‑TAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATaa < 2:905783/151‑1 (MQ=11) actacttAACTCATTGAATCTCAAGGAGTTTTTCTTTTCTTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc > 2:3716136/7‑151 (MQ=21) actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc > 1:5476146/7‑151 (MQ=255) actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc > 1:1907592/7‑151 (MQ=255) actacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTc < 2:549432/145‑1 (MQ=255) ttcttAACTCATTGAATCTCAAGGAGTTTTTCGCTCTGATGCCGCTGGAAGTGGGCCGTATTTTAAGGGGATTTTAGAGCGCGTCAACCTTTAATTTCAATAACCGATGATATCGCAGAAAAAACAAAGCGGGGACGCCTGACTGcccccc > 2:735182/5‑151 (MQ=18) tacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTccc > 1:5431657/5‑151 (MQ=255) tacttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTccc > 2:1468401/5‑151 (MQ=255) tcttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 1:6413016/148‑1 (MQ=255) acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 1:2389049/148‑1 (MQ=255) acttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTcccc < 1:4772594/148‑1 (MQ=255) cttAACTCATTGAATCTCAAGGAGTTTTTCGTTTCGATTTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCg > 2:5100858/3‑151 (MQ=255) cttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCg > 1:336414/3‑151 (MQ=255) ttAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGc > 2:2734525/2‑151 (MQ=255) tAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCt < 1:1065415/151‑1 (MQ=255) tAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCt > 2:605087/1‑151 (MQ=255) tAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCt > 1:4472161/1‑151 (MQ=255) tAACTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCt > 1:5420264/1‑151 (MQ=255) aaCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTa > 1:2899026/1‑151 (MQ=255) aCTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAt > 1:4062873/1‑151 (MQ=255) cTCCTTGAATCTCAAGGAGATTTTCGTTCCGAGGTCGGTGGAAGTGGGGCGCATTTTAAGGGGGTTGGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAtt > 2:4141782/1‑151 (MQ=25) cTCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTAtt < 1:5303340/151‑1 (MQ=255) tCATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTc < 2:2423018/151‑1 (MQ=255) cATTGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCa < 1:2100678/151‑1 (MQ=255) ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc < 1:5568355/151‑1 (MQ=255) ttGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATc > 2:3918924/1‑151 (MQ=255) tGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 2:1095158/151‑1 (MQ=255) tGAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGAGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCt < 1:5591947/151‑1 (MQ=255) gAATCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTa > 1:4379242/1‑151 (MQ=255) aaTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTag > 1:1939930/1‑151 (MQ=255) aaTCTCAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTag > 2:5572217/1‑151 (MQ=255) aTCTCAAGGAGTTTTTTTTTTTTTTTTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGTGTGGCCTGACGGCCTCCCCGCTATTCATCTaga > 2:2345114/1‑151 (MQ=25) tctcAAGGAGTTTTTTGTTCTTTTTTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTagag > 2:1496180/1‑151 (MQ=25) tctcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTagag < 2:962713/151‑1 (MQ=255) ctcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGc > 1:226244/1‑151 (MQ=255) ctcAAGGAGCTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGTGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGAGGAGGCCTTACGGCCACCCCGCTATTCACCTAGAGc > 1:2806457/1‑151 (MQ=21) tcAAGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGca < 1:4127146/151‑1 (MQ=255) aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATGGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcaca > 2:6219545/1‑151 (MQ=255) aaGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGcaca > 2:2199350/1‑151 (MQ=255) aGGAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCacac < 1:4727509/151‑1 (MQ=255) ggAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACAcc < 1:1338081/151‑1 (MQ=255) gAGTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGCGCACACCa > 2:698284/1‑151 (MQ=255) gAGTTTTTCGGTCCGATGTCGCTGGAAGTGGGGCGCAGTATAAGGTGATTCGAGAGGGCGCCAACCTTTAATTTCAATAAACGATGATAGCGCAGTAAAAACAACGCTGAGAGGCCTGACGGCCTCCCCGCGATCCCTCTAGGGCCCAccc > 2:3822304/1‑150 (MQ=18) gTTTTTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGTTTCGAGAGGGCGTCAACCTTTAATCTCAATAACCGTTGTTAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGACCTCCCCGCTATTCCGCTAGAGCACACCAGc > 2:2456359/1‑151 (MQ=25) ttttTCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGca < 1:3323965/151‑1 (MQ=255) ttttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcac < 1:667322/148‑1 (MQ=255) tttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacc < 2:395217/149‑1 (MQ=255) tttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGAAAGAGAAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacc < 2:3711316/149‑1 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca < 1:6219545/150‑1 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca < 1:5125674/150‑1 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca > 1:4402353/2‑151 (MQ=255) ttCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcacca > 2:727181/2‑151 (MQ=255) tCGTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGcaccac < 1:3223256/151‑1 (MQ=255) gTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGa < 1:3430898/151‑1 (MQ=255) gTTCCGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGa > 2:3430898/1‑151 (MQ=255) ccGATGTGGGTGTAAGTGGGGCGCGTTATAAGGGGATCCGAGAGGGCGTCAACCTTTACTTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAgg < 2:5741072/151‑1 (MQ=39) ccGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAgg > 2:461764/1‑151 (MQ=255) ccGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAgg > 2:2656409/1‑151 (MQ=255) ccGATGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAgg > 1:1559919/1‑151 (MQ=255) | CTTGGAAGCGCTGTCAACCATCATCTCAACCGCTTTCGATCATTTGATCGTAGCCCTTACAGC‑‑A‑‑CCTTCCGAATCGTCTAACTCATTGAATCTCAAGGAGTTTGTCGTTCCGTTGTCGCTGGAAGTGGGGCGCATTATAAGGGGATTCGAGAGGGCGTCAACCTTTAATTTCAATAACCGTTGATAGCGCAGAAAAAACAAAGCGGGGAGGCCTGACGGCCTCCCCGCTATTCATCTAGAGCACACCAGCACCACGAAGG > CP009974/1920691‑1920950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |