| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,994,226 | G→A | intergenic (+26/+84) | RPPX_08905 → / ← RPPX_08910 | HAD family hydrolase/aminopeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,994,226 | 0 | G | A | 98.8% | 1200.0 / ‑5.2 | 321 | intergenic (+26/+84) | RPPX_08905/RPPX_08910 | HAD family hydrolase/aminopeptidase |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base A (151/166); total (152/169) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 330 total aligned reads displayed.
AACGGGCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCGGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGCCCCAA > CP009974/1994078‑1994372 | aaCGGGCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGcagccagc > 2:3948935/1‑151 (MQ=255) aCGGGCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCagccagcc < 1:239846/151‑1 (MQ=255) cGGGCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGTGCTGCTTTGcagccagctc > 1:2726024/1‑149 (MQ=255) gggCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCt < 2:4393123/151‑1 (MQ=255) gggCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCt > 2:4557280/1‑151 (MQ=255) gggCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCt > 1:1968074/1‑151 (MQ=255) ggCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTc < 1:1600399/151‑1 (MQ=255) cTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTccc > 2:6426170/1‑151 (MQ=255) gCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCAc > 2:2514340/1‑151 (MQ=255) cAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCAcc < 1:1905875/151‑1 (MQ=255) gCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCg > 2:362590/1‑151 (MQ=255) tGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAg > 1:5216339/1‑151 (MQ=255) tGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAg < 2:3537489/151‑1 (MQ=255) tGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAg > 1:4462768/1‑151 (MQ=255) gTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAgc > 1:4156449/1‑151 (MQ=255) gcgGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAgcggc < 2:3153082/151‑1 (MQ=255) gcgGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAgcggc > 1:5011359/1‑151 (MQ=255) ggTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGt > 2:2899582/1‑151 (MQ=255) gTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTg > 1:1465990/1‑151 (MQ=255) tGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCGGCCCTCCCACCTCGAGCGGCGTgc < 1:308829/151‑1 (MQ=255) tGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTgc > 1:6341784/1‑151 (MQ=255) gggTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGcc > 1:3307835/1‑151 (MQ=255) gggTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGcc < 2:4476919/151‑1 (MQ=255) tGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTtgt < 1:5869838/151‑1 (MQ=255) tGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTtgt < 2:6533996/151‑1 (MQ=255) gCAGCCGGGACCTGATGATCGCAGAAGCCCCCGGTTTCCACGCCGCCAGGGTAGTCGAATTGCATCAGGCTGTTAGCAAGGCGTGAGCGCCAGCAGAGCTGCTTGGCAGCCGGCCCGCCCGCCCCGAGCGGCGCGCGCAGGGCCTTtgccg < 2:4041690/151‑4 (MQ=255) gCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTgg > 1:3760046/1‑151 (MQ=255) aGCCGGGCAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCACCAGAGCTGCTTTGCAGCCAGCTCTCCCACCTCGAGCGGCGTGCGCAGGGCCATCGTgggg > 2:3397742/1‑150 (MQ=255) ggAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTCTGGGAGCgcc > 2:3721910/1‑149 (MQ=255) aaGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCt < 1:2455521/151‑1 (MQ=255) aaGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCt < 2:620680/151‑1 (MQ=255) agCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTGTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTtgt < 2:6227930/151‑1 (MQ=255) gCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTtgtg < 2:2969958/151‑1 (MQ=255) cTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTgtgt > 2:502067/1‑151 (MQ=255) cTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTgtgt > 1:1201286/1‑151 (MQ=255) gCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGAt < 1:2943444/151‑1 (MQ=255) gCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGAt > 1:1703139/1‑151 (MQ=255) gCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGAt < 1:5094143/151‑1 (MQ=255) gCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGAt > 1:5319801/1‑151 (MQ=255) cAGAAGCACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGTGCGGCCTTGTGTCGCGCTg > 2:4056417/1‑151 (MQ=255) agaaCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGcc < 1:2785609/151‑1 (MQ=255) agaaCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGcc < 1:73331/151‑1 (MQ=255) gaaCCCGCTTTCCACTTCGTCACGGTAGCCGATTTGCATCAGGTTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGCTGGGCCg < 1:1135085/151‑1 (MQ=255) gaaCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCg < 1:6099146/151‑1 (MQ=255) gaaCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCg > 1:3594254/1‑151 (MQ=255) aaCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGc < 2:4961939/151‑1 (MQ=255) aCCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCa > 1:2548808/1‑151 (MQ=255) cccGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCaa > 2:1994231/1‑151 (MQ=255) ccGCTTTCCACTTCGCCTCGGTAGCCGATTTGCATCAGGCTTTGAGCAAGGCTTGAGCGCCGGCAGGGCTGCTTTGCAGCCAGCCCTCCCGCCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCaaa < 1:1921806/151‑1 (MQ=39) ccGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCaaa < 1:4596708/151‑1 (MQ=255) cGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAg < 2:1258246/151‑1 (MQ=255) gCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGc > 2:4208083/1‑151 (MQ=255) tCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGcc > 2:1392972/1‑151 (MQ=255) ccACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGccc < 2:615719/151‑1 (MQ=255) cGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAAt > 2:4824140/1‑151 (MQ=255) cGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAAt < 1:6095120/151‑1 (MQ=255) gcGGTGGCCGATTTGCATCAGGCTTTTAGCAAGGCTGGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCa < 2:1655151/150‑1 (MQ=255) cGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCaa > 1:1317935/1‑151 (MQ=255) ggTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCaaa < 1:3653673/151‑1 (MQ=255) ccGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTa < 2:1816260/151‑1 (MQ=255) gATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCTACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGCAGCGGCCTTGTGTCGAGATGGGCCGCAAACCGTCCCCAAAATCCCAAAAGCTAAc > 1:3695989/1‑151 (MQ=255) gATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAAc > 1:4000739/1‑151 (MQ=255) aTTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATATCTCAAAGGCTAAcc > 2:585833/1‑151 (MQ=255) tttGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCa < 2:5065002/151‑1 (MQ=255) ttGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCAt > 1:4282249/1‑151 (MQ=255) tGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATc > 1:5142142/1‑151 (MQ=255) gCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCa > 2:1203497/1‑151 (MQ=255) aTCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGa < 1:4530230/151‑1 (MQ=255) tCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGAc < 1:4727292/151‑1 (MQ=255) cAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACg < 1:4361512/151‑1 (MQ=255) gCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTg < 2:2592574/151‑1 (MQ=255) tttAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAg < 2:5980963/151‑1 (MQ=255) ttAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAgc < 1:975549/151‑1 (MQ=255) aaGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGcgccgc > 1:5345536/1‑151 (MQ=255) ggCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGctt < 1:6200076/151‑1 (MQ=255) ttGAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGctttcc > 1:841946/1‑151 (MQ=255) gAGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGctttcc > 1:6465585/1‑149 (MQ=255) aGCGCCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGctttccttt < 2:376307/151‑1 (MQ=255) gcCAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTttctt > 2:2751444/1‑151 (MQ=255) ccAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTttcttc > 1:2249088/1‑151 (MQ=255) ccAGCAGAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTttcttc < 1:3397742/151‑1 (MQ=255) cagcagAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCa > 2:2135376/1‑151 (MQ=255) agcagAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCaa < 1:6063595/151‑1 (MQ=255) agcagAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCaa > 1:4335619/1‑151 (MQ=255) gcagAGCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAAt < 2:2443489/151‑1 (MQ=255) gagagCGGCGTTGCGGGCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATc < 2:5891955/150‑1 (MQ=38) agagCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCg > 1:3480725/1‑151 (MQ=255) gagCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTCTCTTCAATCga > 2:3813681/1‑150 (MQ=255) cgctgctTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCCAAATCTCAAAGGCTCACCATCAGGGGCTGCAGCGCCGCGTTCCTGTCGTCAATCggg > 2:899570/2‑150 (MQ=37) agCTGCTTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGc > 1:5676219/1‑151 (MQ=255) gctgctTTGCAGCCGGCCGTCCCACCTCGGGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCa < 2:5309646/151‑1 (MQ=255) gctgctTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGctt > 1:4871072/1‑133 (MQ=255) gctgctTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCa > 2:1189559/1‑151 (MQ=255) tgctTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATGTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAAc > 1:3845797/1‑151 (MQ=255) gctTTGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAAcc > 1:4808023/1‑151 (MQ=255) ttGCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGcc < 1:1080206/151‑1 (MQ=255) gCAGCCAGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCCAAGCGGCCCCCAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCATTCCTTTCTTCACTCCGCAACCGcccc > 2:4633498/1‑151 (MQ=38) cagccagcCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGCCCCa < 2:4156449/151‑1 (MQ=255) agccagccCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGCCCCaa < 1:4085637/151‑1 (MQ=255) agccagccCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGCCCCaa > 2:1478510/1‑151 (MQ=255) | AACGGGCTGCAGGCTGTCGCGGTGGGATACGGGTTTGGCAGCCGGGAAGAGCTGATGGCAGAAGAACCCGCTTTCCACTTCGCCACGGTAGCCGATTTGCATCAGGCTTTTAGCAAGGCTTGAGCGCCAGCAGAGCTGCTTTGCAGCCGGCCCTCCCACCTCGAGCGGCGTGCGCAGGGCCTTTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTAACCATCAGACGCTGCAGCGCCGCTTTCCTTTCTTCAATCGGCAACCGCCCCAA > CP009974/1994078‑1994372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |