BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009974	3,793,987	2 bp→CC	coding (293‑294/3894 nt)	RPPX_16900 →	YD repeat‑/RHS repeat‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009974	3,793,987	0	T	C	99.6%	841.0 / NA	250	V98A (GTT→GCC)	RPPX_16900	YD repeat‑/RHS repeat‑containing protein
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (122/127); total (123/127)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP009974	3,793,988	0	T	C	100.0%	845.8 / NA	250	V98A (GTT→GCC)	RPPX_16900	YD repeat‑/RHS repeat‑containing protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/127); total (123/127)

Only 100 of 250 total aligned reads displayed.

TGACGTTGCGCTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGTTGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGTACGTCAGG  >  CP009974/3793843‑3794132

||

tgacgtTGCGCTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGgcgc                                                                                                                                             <  2:5160228/151‑1 (MQ=255)

 gacgtTGCGCTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCt                                                                                                                                            >  1:629673/1‑151 (MQ=255)

       gcgcTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTaccaac                                                                                                                                      <  2:5251567/151‑1 (MQ=255)

        cgcTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTaccaacc                                                                                                                                     <  1:3771105/151‑1 (MQ=255)

         gcTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTaccaaccc                                                                                                                                    >  2:6449055/1‑150 (MQ=255)

              aGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGa                                                                                                                               <  2:595139/151‑1 (MQ=255)

                   gCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATg                                                                                                                          <  1:4017282/151‑1 (MQ=255)

                    cTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGt                                                                                                                         >  2:2617171/1‑151 (MQ=255)

                    cTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGt                                                                                                                         <  2:5968057/151‑1 (MQ=255)

                    cTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGt                                                                                                                         >  2:651048/1‑151 (MQ=255)

                     tCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTc                                                                                                                        <  2:4245914/151‑1 (MQ=255)

                       aGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCgg                                                                                                                      >  2:2675243/1‑151 (MQ=255)

                        gCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGga                                                                                                                     <  1:83346/151‑1 (MQ=255)

                         ccTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGgag                                                                                                                    >  2:816847/1‑151 (MQ=255)

                            tGCCGACAGTGGTGTTGGTACGGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGaaa                                                                                                                 <  2:4860338/151‑1 (MQ=255)

                             gCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGaaaa                                                                                                                <  2:887962/151‑1 (MQ=255)

                               cGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAg                                                                                                              <  2:480726/151‑1 (MQ=255)

                                gACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAACAGa                                                                                                             >  2:3125677/1‑151 (MQ=255)

                                 aCAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGAt                                                                                                            >  2:6052011/1‑151 (MQ=255)

                                   aGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCg                                                                                                          <  1:5262573/151‑1 (MQ=255)

                                      ggTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGaca                                                                                                       >  1:2773646/1‑151 (MQ=255)

                                         tttGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGt                                                                                                    >  2:1508083/1‑151 (MQ=255)

                                          ttGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGtt                                                                                                   <  2:5368200/151‑1 (MQ=255)

                                          ttGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGtt                                                                                                   <  1:5080947/151‑1 (MQ=255)

                                           tGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTc                                                                                                  <  2:4040230/151‑1 (MQ=255)

                                           tGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTc                                                                                                  >  2:3575148/1‑151 (MQ=255)

                                            ggTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTcc                                                                                                 <  1:4371502/151‑1 (MQ=255)

                                             gTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGGTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGCTGTCGGAGAAAAAGAGCGACACGTTCCa                                                                                                >  2:5488720/1‑151 (MQ=255)

                                              tACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCAc                                                                                               >  2:5511203/1‑151 (MQ=255)

                                              tACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCAc                                                                                               >  1:2104652/1‑151 (MQ=255)

                                                 aGGCTGGAACCTGCGCACCACCGAATTCGGCCCTGCCCAGCACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCtt                                                                                            <  2:4993796/151‑1 (MQ=255)

                                                 aGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCtt                                                                                            >  2:5830168/1‑151 (MQ=255)

                                                  ggCTGGGACCTGCGCACCACCGAATTCGGCCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCttt                                                                                           <  2:6198093/151‑1 (MQ=255)

                                                   gCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTa                                                                                          >  1:5539694/1‑151 (MQ=255)

                                                   gCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAACGCGACGGCCGGGCCGGCGCTACCAACCAGTTCACGATGTCGGAGAAAAAGATTGACAAGTTCCCCCtttt                                                                                          >  2:3903571/1‑150 (MQ=14)

                                                    cTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTAt                                                                                         >  1:5491719/1‑151 (MQ=255)

                                                     gggAACCTGCGCAACCCCGAATTCGACCCTGCCAAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATg                                                                                        <  2:1301885/150‑1 (MQ=14)

                                                       gAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAg                                                                                      >  1:6449723/1‑151 (MQ=255)

                                                       gAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAg                                                                                      >  1:5282640/1‑151 (MQ=255)

                                                       gAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAg                                                                                      <  1:2994642/151‑1 (MQ=255)

                                                       gAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAg                                                                                      <  1:3057005/151‑1 (MQ=255)

                                                        aaCCTGCGCACCACCGAATTCGCCCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAgg                                                                                     <  2:3601240/151‑1 (MQ=255)

                                                        aaCCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAATGTACAAAGCCGACGGCCGTGTCGGCGCTACCAACCAGTTGACGATGTCGGAGAACAAGATCGACACGTTCCACCTGAATGAgg                                                                                     >  1:1090315/1‑151 (MQ=14)

                                                        aaCCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAgg                                                                                     >  2:5316822/1‑151 (MQ=255)

                                                          ccTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGTTCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGAc                                                                                   <  2:5015969/151‑1 (MQ=255)

                                                          ccTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGAc                                                                                   <  1:1502824/151‑1 (MQ=255)

                                                           cggcgcCCCACCGAATTCGACCCTGCCCAAAACCGCCGAATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACg                                                                                  <  1:343877/149‑1 (MQ=14)

                                                             gcgcACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGGTCCACCTTTATGAGGACGCt                                                                                >  2:1831369/1‑151 (MQ=255)

                                                              cgcACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTg                                                                               >  2:3201236/1‑151 (MQ=255)

                                                               gcACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGa                                                                              >  1:2759994/1‑151 (MQ=255)

                                                               gcACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGa                                                                              >  1:484654/1‑151 (MQ=255)

                                                                caccacCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGaa                                                                             <  2:4417025/151‑1 (MQ=255)

                                                                       gAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCt                                                                      <  1:2314616/151‑1 (MQ=255)

                                                                         aTTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTgg                                                                    <  1:1449027/151‑1 (MQ=255)

                                                                          ttCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGc                                                                   >  2:2501114/1‑151 (MQ=255)

                                                                          ttCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGc                                                                   >  2:4548620/1‑151 (MQ=255)

                                                                                  tGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGgtggtg                                                           >  2:3361810/1‑151 (MQ=255)

                                                                                   gCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGc                                                          >  2:5585445/1‑151 (MQ=255)

                                                                                      cAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCAcc                                                       >  1:1340318/1‑151 (MQ=255)

                                                                                      cAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCAcc                                                       <  1:4418962/151‑1 (MQ=255)

                                                                                         aaCCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCt                                                    <  1:3919952/151‑1 (MQ=255)

                                                                                           ccgccgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTcc                                                  <  1:739449/151‑1 (MQ=255)

                                                                                            cgccgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCg                                                 >  2:2193181/1‑151 (MQ=16)

                                                                                            cgccgGATCATTGCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCg                                                 <  2:1616125/151‑1 (MQ=255)

                                                                                             gccgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCgg                                                >  2:2065821/1‑151 (MQ=19)

                                                                                               cgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCGCCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGcc                                              >  2:1009937/1‑150 (MQ=12)

                                                                                               cgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCg                                              >  1:1985329/1‑151 (MQ=16)

                                                                                               cgGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCAGGCg                                              >  2:3718594/1‑151 (MQ=255)

                                                                                                 gATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCgtg                                            >  1:3701665/1‑151 (MQ=19)

                                                                                                   tCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGGAGACCGCTGGCGGGTGGTGCACCGCTCCGGCgtggt                                          <  1:1938278/151‑1 (MQ=255)

                                                                                                   tCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCgtggt                                          <  2:4301431/151‑1 (MQ=16)

                                                                                                     aTTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGtggtgg                                        <  2:4622625/151‑1 (MQ=255)

                                                                                                        tCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAg                                     >  2:1170409/1‑151 (MQ=16)

                                                                                                          ccTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTg                                   >  2:1740893/1‑151 (MQ=16)

                                                                                                           cTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCCCCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGCAGTGc                                  >  2:469639/1‑151 (MQ=255)

                                                                                                           cTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGc                                  >  1:2157598/1‑151 (MQ=255)

                                                                                                            tagCCAGTGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCt                                 <  2:6082178/149‑1 (MQ=255)

                                                                                                            tGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCt                                 <  1:463505/151‑1 (MQ=255)

                                                                                                             ggCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTc                                <  1:5011598/151‑1 (MQ=25)

                                                                                                               ccAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGa                              >  2:2229660/1‑151 (MQ=255)

                                                                                                               ccAATGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGa                              >  1:3649237/1‑151 (MQ=19)

                                                                                                                   tGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGa                                                                                       >  2:2769633/1‑90 (MQ=255)

                                                                                                                   tGGCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGa                          >  1:4898196/1‑151 (MQ=255)

                                                                                                                     gCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGaaa                        >  1:4246300/1‑151 (MQ=19)

                                                                                                                     gCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGaaa                        >  2:5114588/1‑151 (MQ=255)

                                                                                                                     gCGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGaaa                        <  1:4676005/151‑1 (MQ=255)

                                                                                                                      cGAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGaaaa                       >  2:5617147/1‑151 (MQ=21)

                                                                                                                       gAAACGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAg                      >  1:5410320/1‑151 (MQ=255)

                                                                                                                        aaaCGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAgg                     >  1:5952190/1‑151 (MQ=255)

                                                                                                                        aaaCGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAgg                     >  2:5873565/1‑151 (MQ=19)

                                                                                                                          aCGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGtt                   <  2:4068130/151‑1 (MQ=255)

                                                                                                                           cGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTc                  >  2:5338208/1‑151 (MQ=255)

                                                                                                                           cGTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGAAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTc                  <  1:5981065/151‑1 (MQ=255)

                                                                                                                            gtgcAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCg                 <  2:6529498/148‑1 (MQ=255)

                                                                                                                            gTTCAAAGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCg                 <  1:3361810/151‑1 (MQ=255)

                                                                                                                                 aaGCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGccc            <  1:2906897/151‑1 (MQ=255)

                                                                                                                                   gCCGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGt          >  1:1870577/1‑151 (MQ=255)

                                                                                                                                    ccGACGGCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGTa         <  2:2400827/151‑1 (MQ=255)

                                                                                                                                         ggCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGTACGTCa    <  1:1771534/151‑1 (MQ=255)

                                                                                                                                         ggCCGTGCCGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGTACGTCa    <  1:5334431/151‑1 (MQ=255)

||

TGACGTTGCGCTATAGCCCGCTCAGCCTTGCCGACAGTGGTTTTGGTACAGGCTGGAACCTGCGCACCACCGAATTCGACCCTGCCCAGAACCGCCGGATCATTTCCCTGGCCAATGGCGAAACGTTCAAAGCCGACGGCCGTGTTGGCGCTACCAACCAGTTGACGATGTCGGAGAAAAAGATCGACACGTTCCACCTTTATGAGGACGCTGAAGACCGCTGGCGGGTGGTGCACCGCTCCGGCGTGGTGGAAGTGCTCGAGCGAAAAGGTTCGAGCCCGTACGTCAGG  >  CP009974/3793843‑3794132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`