| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,247,115 | 2 bp→T | intergenic (‑249/‑561) | RPPX_05495 ← / → RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,247,115 | 0 | A | . | 99.5% | 950.5 / ‑2.3 | 197 | intergenic (‑249/‑562) | RPPX_05495/RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (98/97); total (99/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| * | CP009974 | 1,247,116 | 0 | G | T | 99.0% | 696.6 / NA | 197 | intergenic (‑250/‑561) | RPPX_05495/RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (97/97); total (99/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 197 total aligned reads displayed.
CGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGACAT > CP009974/1246973‑1247258 | cGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAgg < 2:3900315/151‑1 (MQ=255) ggCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATg < 2:5950846/150‑1 (MQ=255) ccTGCCCTGGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATggg < 2:3798918/151‑1 (MQ=17) ccTGCCCTAGCGGTGTTTTCATGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTACGCGACTTCAGGAGGCCGAACGCAGGCCTTACGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATggg < 1:2457307/151‑1 (MQ=17) ccTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGGGACGGGCATGGATGCCCGGCAAGCGCTG‑TGCCCCAGGATggg > 2:5468618/1‑151 (MQ=18) cccTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCt < 2:2684424/151‑1 (MQ=255) cTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGc > 2:2576066/1‑151 (MQ=255) tAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCTGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCa < 2:6308960/151‑1 (MQ=255) tAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCa < 1:5114737/151‑1 (MQ=255) tAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCa < 1:2868643/151‑1 (MQ=255) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg < 2:4155287/151‑1 (MQ=255) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg < 1:2043657/151‑1 (MQ=255) aGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAg < 1:4386450/151‑1 (MQ=255) cGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAgcg > 2:4693504/1‑151 (MQ=255) cGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAgcg < 1:4554325/151‑1 (MQ=255) cGGTGGTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAgcg < 2:4769581/151‑1 (MQ=17) gtgtTTTCAGGGCTTGCCGGCTTTTGATCTGGCTTTTGATCGTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGcgcg < 2:3255888/151‑1 (MQ=14) ttttCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtc < 1:5568053/151‑1 (MQ=255) tttCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcc > 2:1685952/1‑151 (MQ=255) tttCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcc > 1:902116/1‑151 (MQ=255) ttCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGtcct < 2:674480/151‑1 (MQ=255) aGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGCCCTGGATCCTCGCGACTTCAGGGGGCCGAACGCAGGCCTTGCGCAGGGGGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc < 2:6232676/151‑1 (MQ=17) aGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc < 2:5434918/151‑1 (MQ=255) aGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc > 2:2118903/1‑151 (MQ=255) ggTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCg > 2:861378/1‑151 (MQ=255) tCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg < 1:5623956/151‑1 (MQ=255) tCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg < 1:3529686/151‑1 (MQ=255) tCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg < 1:382886/151‑1 (MQ=255) cTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa > 1:4454340/1‑151 (MQ=255) cTTGCCGGCTTTTGAGCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa < 1:653067/151‑1 (MQ=255) ttGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAg < 1:609872/151‑1 (MQ=255) ttGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAg < 1:5405991/151‑1 (MQ=255) tGCCGGCTTGTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGc < 1:3552589/151‑1 (MQ=255) cGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAg > 2:2287388/1‑151 (MQ=255) cGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAg < 1:147648/151‑1 (MQ=255) ggCTTTTGATCTGGCTTTTGATCCTTACCTTGTTCTTCGCGTCTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGTGGTGTCGCGCCTGGTTGCCCGTCTTACGCTG‑TGTCCCAGGCTGTGGCCGTCCGCGCGGTCCTCCCGTGATCACGc > 2:2921116/1‑151 (MQ=2) gCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGcc < 2:6029467/151‑1 (MQ=255) gCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGcc < 2:2760567/151‑1 (MQ=255) gCTGTTGATCTGGCTGTTGATGCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGcc < 1:5926514/151‑1 (MQ=14) cTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc > 1:2778562/1‑151 (MQ=255) tttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTa > 1:4876978/1‑151 (MQ=255) tttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTa < 2:2787312/151‑1 (MQ=255) ttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTAc < 2:345442/151‑1 (MQ=255) ttGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTAc < 1:2231400/151‑1 (MQ=255) gATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGc > 1:987385/1‑151 (MQ=255) aTCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGcc > 1:2299487/1‑150 (MQ=255) aTCTGGCTTGTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCt < 2:4060890/151‑1 (MQ=14) ttGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATgggg > 1:1550065/1‑105 (MQ=11) ttGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATgggg < 2:1550065/105‑1 (MQ=11) tGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGGGCAAGCCCTACGCTCGGCCTCCTg > 2:2462926/1‑151 (MQ=18) tGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTg > 1:2386894/1‑151 (MQ=255) gATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGa < 1:513223/151‑1 (MQ=255) aTCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGaa > 1:4135646/1‑151 (MQ=255) aTCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGaa < 1:2960450/151‑1 (MQ=255) gACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGc < 1:6240886/151‑1 (MQ=255) aCCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCa > 1:212551/1‑151 (MQ=255) ccTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCaa < 1:1178206/151‑1 (MQ=255) gctcttctCGAGTTCAGGAGGGCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTg < 2:5734354/149‑1 (MQ=17) gtgttCGCGACTTCATGAGGCCGGACGGAGGCCTTGCGTGGGTGGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAGGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGc < 2:5371333/148‑1 (MQ=17) tcgtCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCa < 2:5652102/148‑1 (MQ=255) tCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCa > 1:1058211/1‑151 (MQ=255) cTTCGCGACTTCAGGAGAGGTAACCAGGGTCTTGGGCAGGGAGGTGATGTTTATGGTTGCCCGTCAAGCGCTG‑TGCCCCAGGTTTGGGCCTGCAGCGCGGTCCTCCCGGGTGCAAGCCCTACGCTCGGCTTCCTGAAGTCGCAATCTGCAg < 2:3591055/151‑1 (MQ=12) acgtCAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGa < 2:101346/148‑1 (MQ=255) cAGGAGGCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGCAGTCGCAATCTGCAGCGCCTGATCaa > 2:1924823/1‑151 (MQ=18) aggaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAAc < 2:1058211/151‑1 (MQ=255) ggaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAAcc > 1:3239715/1‑151 (MQ=255) gaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcg > 1:4188088/1‑151 (MQ=255) gaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcg < 2:1800938/151‑1 (MQ=255) gaggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcg > 1:834133/1‑151 (MQ=255) aggCCGAACGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACcgc > 2:318429/1‑151 (MQ=255) aaCGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCtt < 1:1273821/151‑1 (MQ=255) gCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGa > 2:2500913/1‑151 (MQ=255) gCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGa > 1:1959442/1‑151 (MQ=255) aGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAg > 1:2310604/1‑151 (MQ=255) aGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAg > 1:2555492/1‑151 (MQ=255) cTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGAc < 1:6445859/151‑1 (MQ=255) ttGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACa < 1:1233556/151‑1 (MQ=255) gcgcAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGt > 1:3630518/1‑151 (MQ=255) cgcagggaggTGACGTGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTa > 1:1072279/4‑151 (MQ=25) gcatggaggTGACGGGCATGGATGCCCGTCATGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCCGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTaa < 2:5114247/147‑1 (MQ=25) gcagggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTaa > 1:4385019/3‑151 (MQ=255) gcagggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTaa < 2:4876978/149‑1 (MQ=255) gggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAagag > 1:3961033/1‑151 (MQ=255) gaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCa < 2:443447/151‑1 (MQ=255) ggTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCaaa < 1:3167564/151‑1 (MQ=255) gACGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTACGAGCAAAAGc > 2:6132899/1‑151 (MQ=255) gcGGGCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGcc < 2:1904807/150‑1 (MQ=255) gggCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCag > 2:2425641/1‑151 (MQ=255) gggCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCag < 2:4144479/151‑1 (MQ=255) ggCATGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCaga > 1:29870/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 1:1508350/1‑151 (MQ=255) aTGGATGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGcc > 2:1405959/1‑151 (MQ=255) aTGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCg > 1:3357108/1‑151 (MQ=255) aTGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCg < 2:6436962/151‑1 (MQ=255) tGCCCGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCGCCTGAAGGCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCgg > 1:5475894/1‑151 (MQ=255) ccGTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCa < 2:750031/144‑1 (MQ=255) gTCAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGa > 1:4535044/1‑151 (MQ=255) cAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGACa < 1:2654705/151‑1 (MQ=255) cAAGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGACa > 1:2679433/1‑151 (MQ=255) aaGCGCTG‑TGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGACAt < 1:6185489/151‑1 (MQ=255) | CGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGACCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCAGCGCCTGATCAACCGCGCGCTTAGAAGCGACAGTAAGAGCAAAAGCCAGAGCCATCGGCTCGACAT > CP009974/1246973‑1247258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |