| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 1,358,424 | 2 bp→TC | intergenic (+285/+2404) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 1,358,424 | 0 | C | T | 99.3% | 761.4 / NA | 307 | intergenic (+285/+2405) | RPPX_05970/RPPX_05980 | hypothetical protein/tRNA‑Thr |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (153/150); minor base G (2/0); total (156/151) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | CP009974 | 1,358,425 | 0 | T | C | 100.0% | 765.4 / NA | 307 | intergenic (+286/+2404) | RPPX_05970/RPPX_05980 | hypothetical protein/tRNA‑Thr |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (156/151); total (156/151) | |||||||||||
Only 100 of 307 total aligned reads displayed.
CATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCGGGACTGGCGGCTCCTTACGTCCGGGAGCAAGGGCATCTCATGATCTGGCCTCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCTG > CP009974/1358279‑1358569 || ttGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAg < 2:6390027/151‑1 (MQ=255) gAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCa < 2:545113/151‑1 (MQ=25) aGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAc > 1:5661959/1‑151 (MQ=25) aGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAc > 1:2394714/1‑151 (MQ=25) gCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCAcc > 2:1632445/1‑151 (MQ=25) aGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCg < 1:2204993/151‑1 (MQ=21) ttCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGt > 1:678353/1‑151 (MQ=21) cctccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTgg > 2:4225816/1‑151 (MQ=21) ctccCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTggg > 2:818089/1‑151 (MQ=21) tccgacgATCTAGTCCTAGCACGGACCTGATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGc < 2:4315901/145‑1 (MQ=18) cccAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCg > 2:6073622/1‑151 (MQ=21) ccaaaGATCTAGTCCTAGCACAGACCTTATTTAGGGTTCAAGGCACCTGCAACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCTGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTCCCGGTGGGCg < 2:1024864/148‑1 (MQ=18) ccAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCgg > 2:1081889/1‑151 (MQ=21) aaGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCgggg > 1:3845214/1‑150 (MQ=18) aGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTg < 1:2096172/151‑1 (MQ=18) tAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGc > 1:3743878/1‑151 (MQ=18) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGc > 1:5503952/1‑151 (MQ=18) tCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGc > 1:4067536/1‑151 (MQ=18) tAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCAtt > 1:6346983/1‑151 (MQ=18) cacaGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTATGCTGGACTGGAGGCTCCTTAACACCGGGAGCAAGGGCCTCTCATGATCTGACTCCCTGCGCACCGTTACCGGCGGGCGGGGGCAGGATGCATTGGc > 2:5318497/1‑151 (MQ=255) gACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGAc > 2:2925911/1‑151 (MQ=17) ccTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACga < 1:2943740/151‑1 (MQ=17) cTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACgag < 1:4397392/151‑1 (MQ=17) cTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACgag < 1:5369571/151‑1 (MQ=17) ttATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGACGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACgaga > 2:6304753/1‑151 (MQ=17) tttggtgATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCa < 2:3724623/145‑1 (MQ=14) ttAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAg > 1:5239190/1‑151 (MQ=17) aGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTg > 1:5488187/1‑151 (MQ=17) gggATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGc < 1:4038963/151‑1 (MQ=17) tCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCcgcg > 1:6256535/1‑151 (MQ=17) cAAGGCACCTGCGACATGTGGGAAATGTCCGCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCga < 2:3389527/151‑1 (MQ=17) aaGGCACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCgag > 1:557714/1‑151 (MQ=17) aaGGCACCTGCGACATGGGGGAAATGTCCTCTACGCTGGACTGGCGGCGCCTTAAGACCGGGAGCAAGGGCATCGCATGATCTGGCGCCCTGCGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAAGCCAGGGCcgcgcg > 2:2814602/1‑149 (MQ=14) cACCTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGACATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATcc < 2:718344/151‑1 (MQ=14) ccTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTg > 2:5216845/1‑151 (MQ=14) cTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGa < 2:580383/151‑1 (MQ=14) cTGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGa < 1:152273/151‑1 (MQ=14) tGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTGAGGCCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAg < 2:4917370/151‑1 (MQ=14) tGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGATCTCCTGAg > 1:5431651/1‑151 (MQ=14) tGCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAg < 1:911046/151‑1 (MQ=14) gCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGc > 1:264165/1‑151 (MQ=14) gCGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCGGAGCACCGTTACCGGGGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGc > 2:2127363/1‑151 (MQ=14) cGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGcc > 1:1890684/1‑151 (MQ=14) cGACATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGcc < 2:1707353/151‑1 (MQ=14) aCATGTGGGAAATGTCCTCTACGCTAGACTGGCGGCTCCTTAAGACCGGCAGCAAGGGCATCTCATGATCTAGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGAAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCgg < 2:586016/151‑1 (MQ=14) cATGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCggg > 2:3311759/1‑151 (MQ=14) aTGTGGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGt < 2:1826928/151‑1 (MQ=14) tgtgGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGGGGAGGCTGCATTGGCTGACGCGACCAGTGCCGCGAGATCCCGAGCCGGGtg > 2:2151016/1‑151 (MQ=14) tgGGAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgca > 2:2478753/1‑151 (MQ=14) tgGGAAATGTCCTCTACGCTGGACTGGCGGCACCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgca < 2:5105543/151‑1 (MQ=14) gggAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgcat < 2:1943364/151‑1 (MQ=14) ggAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgcatg > 1:3348606/1‑151 (MQ=14) gAAATGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGtgcatgc > 2:4965586/1‑151 (MQ=14) aaTGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATgcag > 1:456117/1‑151 (MQ=14) aaTGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGCGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATgcag > 2:4158978/1‑151 (MQ=14) tGTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATgcagca < 2:1276955/151‑1 (MQ=14) gTCCTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTCCCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGGCGCGAGATCCTGGGCCGAGTGCATGCAGCAc > 2:5077729/1‑151 (MQ=14) ccTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTg > 1:1193260/1‑151 (MQ=17) ccTCTACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTg < 1:4273007/151‑1 (MQ=17) tctACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGACGCGAGCTCCTGAGCCGGGTGCATGCAGCACTGCg > 2:3905788/1‑151 (MQ=14) ctACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGa > 2:2263967/1‑151 (MQ=14) ctACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGa < 2:434171/151‑1 (MQ=255) tACGCTGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGAt > 1:5939564/1‑151 (MQ=14) aCGCTGGACTGGCGGCACCATAAGACAGGGAGCAAGAGCATCTCATGATCTGGCTCCATGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATg < 2:1144804/151‑1 (MQ=14) cgctGGACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGa > 1:2806319/1‑151 (MQ=14) gctggACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGAc > 1:4205510/4‑151 (MQ=14) ctggACTGGCGGCTCCTTAAGCCCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGCGCACCGTTACCGGTGGGCGGGTGGAGGCTGCGCTCGCTGACGAGCCCAGTGCCGCGAGACCCTGCCCCGGGTGCATGCCGCACTGCGATGAct > 2:2558592/3‑150 (MQ=14) ctggACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGAca > 2:6031374/3‑150 (MQ=14) ctggACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGAca < 2:2998480/149‑2 (MQ=14) tggACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGAcag > 1:1372617/2‑149 (MQ=14) ggACTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGAcagg > 2:1482635/1‑148 (MQ=14) aCTGGCGGCTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAgggg > 1:802421/1‑151 (MQ=14) cggcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGc > 2:591844/1‑151 (MQ=14) cggcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGc < 1:4225570/151‑1 (MQ=14) ggcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGGTCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGTGCATGcc > 2:4020851/1‑151 (MQ=14) gcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTg > 1:4679110/1‑132 (MQ=14) gcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTg < 2:4679110/132‑1 (MQ=255) gcTCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCt < 1:5145111/151‑1 (MQ=14) tCCTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGa < 1:5754040/151‑1 (MQ=255) cTTAAGACCGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACt < 2:4494402/151‑1 (MQ=14) taagaccGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTgt < 1:4443562/146‑1 (MQ=14) aagaccGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTgtc < 1:251689/147‑1 (MQ=255) accGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTgtcagt > 1:730917/2‑151 (MQ=255) cGGGAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTgtcagtcc > 1:3575204/1‑150 (MQ=255) ggAGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAgg > 1:6466316/1‑151 (MQ=255) aGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTg < 1:6112195/151‑1 (MQ=255) aGCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTg > 2:2341620/1‑151 (MQ=255) gCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGc < 2:678353/151‑1 (MQ=255) gCAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGc > 2:1206894/1‑151 (MQ=255) cAAGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGCGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCa > 2:2439698/1‑151 (MQ=255) aaGGGCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAg < 2:1351972/151‑1 (MQ=255) gggCATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTc > 1:3290521/1‑151 (MQ=255) ggCAGCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTcc < 2:5677302/151‑1 (MQ=255) cATCTCATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCAt > 1:3481830/1‑151 (MQ=255) cATGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCtt < 1:4804656/151‑1 (MQ=255) aTGATCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTg > 2:3620275/1‑151 (MQ=255) aTCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTc < 2:3528135/151‑1 (MQ=255) tCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCt < 1:2925911/151‑1 (MQ=255) tCTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCt < 1:1677877/151‑1 (MQ=255) cTGGCTCCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACAGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCTg < 1:5801823/151‑1 (MQ=255) || CATTGAGCCAATGAGTTCCTCCCAAGATCTAGTCCTAGCACAGACCTTATTTAGGGATCAAGGCACCTGCGACATGTGGGAAATGTCCTCTACGCGGGACTGGCGGCTCCTTACGTCCGGGAGCAAGGGCATCTCATGATCTGGCCTCCTGAGCACCGTTACCGGTGGGCGGGTGGAGGCTGCATTGGCTGACGAGACCAGTGCCGCGAGATCCTGAGCCGGGTGCATGCAGCACTGCGATGACCGGGGCATGCCTGACTGTCAGTCAGGTGCAGTCCATTCCTTGGTCTG > CP009974/1358279‑1358569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |