New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	U00096	696863 =	42 (0.240)	33 (0.200) +GAAGAAACAATC	10/268	14.7	24.5%	intergenic (‑33/+2)	glnW/glnU	tRNA‑Gln/tRNA‑Gln
	?	U00096	= 697134	180 (1.020)					intergenic (‑1/+379)	metT/asnB	tRNA‑Met/asparagine synthetase B
Rejected: Coverage evenness skew score above cutoff.

AACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAA  >  U00096/696720‑697009                                                                                                                                                |                                                                                                                                                   aaCCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGc                                                                                                                                               <  2:402628/149‑1 (MQ=255)   ccAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACCCGAAGAAGATGGCTg                                                                                                                                             <  2:402629/149‑1 (MQ=255)                 gatccAGATTGTTTATTCGATGGCTTGGGAACCTTGATCCGAACCAGGGAATGCCTGTATCAAACAGCGGTGCCTTACCGCTTGGCGATACCCCACTAACCGGGCGGGGAACCGAGTACTCGAAGAAGATGGCTGGGGTACCTGGATTc                                                                                                                               <  2:1506184/146‑1 (MQ=21)                      aGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAAAAACCGGGCGGTGACACGCTTACTCGAAGAAGCTGGCTGGGGTACCTGGATTCGAAcc                                                                                                                          >  2:402706/1‑149 (MQ=255)                                                ccTTGATTCGATCCAGGTATTGACGGTATCAATATCCGGTTCCTTACCGATTGTCGATACCCCAATAACCGTGCGTTGAAGCGATTACTCGAAGTAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGt                                                                                                <  2:402644/149‑1 (MQ=21)                                                  tGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAAACGGGCGGTGAAACGATAACTCGAAGAAAAAGGATGGGGTACCTGGCTTCGATCCAGGGAAAGCCGGGATCAAAAACCGGTGc                                                                                              >  2:402731/1‑149 (MQ=21)                                                   ggATTCGAACCTGGGAATGCCGGAATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAagaaga                                                                                                                                                   <  1:402645/95‑1 (MQ=255)                                                                  aaTGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGCGGTACCTGGATTCGAACCAGGCAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGCCgct                                                                              >  2:402713/1‑147 (MQ=255)                                                                                    cGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGc                                                                                                                                               <  1:402652/66‑1 (MQ=255)                                                                                        gCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAAc                                                                                                                           <  1:402653/82‑1 (MQ=255)                                                                                            tACCGCTTGGCGATACCCCAAGCGACGGGCGCTGACGCGCTTACGCGAAGGGGATGGCTGCGGTACCTCGCTCCCAACCCGGCACGGCCGGAATCAACTCCCGCTGCATGAACTCTAGGCGCTACCCAGACCGTAACACGCtgtgggtg                                                    >  2:402718/1‑142 (MQ=255)                                                                                              ccGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCt                                                                                                                                     <  1:402654/66‑1 (MQ=255)                                                                                                gCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGc                                                                                                                                               <  1:402655/54‑1 (MQ=255)                                                                                                       gATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCgg                                         >  1:402732/1‑149 (MQ=255)                                                                                                       gATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCgg                                         >  2:2728730/1‑149 (MQ=255)                                                                                                       gATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCgg                                         >  1:402721/1‑149 (MQ=255)                                                                                                       gATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCg                                          >  1:402722/1‑148 (MQ=255)                                                                                                          aCCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAg                                      >  1:402719/1‑149 (MQ=255)                                                                                                            cccAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc                                    >  1:402715/1‑149 (MQ=255)                                                                                                            cccAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc                                    >  1:402708/1‑149 (MQ=255)                                                                                                             tcAATAACCGTGCGTTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCg                                   <  2:402657/148‑1 (MQ=255)                                                                                                              cAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCga                                  >  1:402716/1‑149 (MQ=255)                                                                                                                aTAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGt                                                                                                                                         <  2:402650/44‑1 (MQ=255)                                                                                                                      gggCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGTCAATGCCGGTATCAAAAAACGGTGCCTTACCGCTAGCCGATACCCAATACGTACAACGCTTTCTGGTCAATGGTGCGGTAGGCGAGACTTGaa                          >  1:402737/1‑149 (MQ=25)                                                                                                                      gggCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGa                           >  1:402703/1‑148 (MQ=255)                                                                                                                      gggCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACAGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGaa                          >  2:402724/1‑149 (MQ=255)                                                                                                                       ggCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAAc                         >  1:402778/1‑149 (MQ=255)                                                                                                                        gCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACt                        >  1:402714/1‑149 (MQ=255)                                                                                                                          ggTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCg                      >  1:402743/1‑149 (MQ=255)                                                                                                                            tGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGca                    >  1:402749/1‑149 (MQ=255)                                                                                                                             gAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTAGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACAGCTTGGCGATACCCAATCAGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcac                   >  2:402746/1‑149 (MQ=255)                                                                                                                               aCCGCTTACTCGAAGTAGATGGCTGGGGTACCTGGa                                                                                                                                  <  2:402651/36‑1 (MQ=255)                                                                                                                                     tACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgcg           >  1:402758/1‑149 (MQ=255)                                                                                                                                     tACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgcg           >  1:402726/1‑149 (MQ=255)                                                                                                                                     tACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCCCACACCTTgcg           >  2:402728/1‑149 (MQ=255)                                                                                                                                      aCTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTAc                                                                                         <  1:402658/70‑1 (MQ=255)                                                                                                                                       cTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCGGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACGTTgcggc         >  1:402756/1‑149 (MQ=255)                                                                                                                                        tCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgcggcg        >  1:402750/1‑149 (MQ=255)                                                                                                                                          ttcttcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGcc      <  2:402674/143‑1 (MQ=255)                                                                                                                                           tcttcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc                                    >  2:402690/6‑118 (MQ=255)                                                                                                                                           aagaagATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCa     >  1:402729/1‑149 (MQ=255)                                                                                                                                           aagaagATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAAACGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCa     >  1:402728/1‑149 (MQ=255)                                                                                                                                             gaagaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGgcgc       >  1:402724/1‑145 (MQ=255)                                                                                                                                             gaagaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGcc      >  2:402726/1‑146 (MQ=255)                                                                                                                                              tcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTc                                                        <  1:402676/93‑1 (MQ=255)                                                                                                                                              tcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAAACGGTGCCTTACCGCTTGGCGATACCCCATACGTACAACGCTTTATCGAGAATGGTGAGGGAGGCGAGACTTGAACTCGCAAACCATGAGGCGAAAGaa  >  2:402735/3‑149 (MQ=18)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATc                                                                      <  1:402688/79‑1 (MQ=32)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCttt                                                         <  1:402686/92‑1 (MQ=255)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAAt                                                <  1:402672/101‑1 (MQ=255)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGt                                             <  1:402682/104‑1 (MQ=255)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGc                                    <  1:402669/113‑1 (MQ=255)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGAc                               <  1:402689/118‑1 (MQ=255)                                                                                                                                                gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgc            <  1:402671/137‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   AACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAA  >  U00096/696720‑697009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.