New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	U00096	696863 =	26 (0.250)	18 (0.190) +GAAGAAACAATC	7/268	11.7	25.9%	intergenic (‑33/+2)	glnW/glnU	tRNA‑Gln/tRNA‑Gln
	?	U00096	= 697134	86 (0.830)					intergenic (‑1/+379)	metT/asnB	tRNA‑Met/asparagine synthetase B
Rejected: Coverage evenness skew score above cutoff.

GCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACC  >  U00096/696715‑697011                                                                                                                                                     |                                                                                                                                                     gCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCAaagaag                                                                                                                                                      <  1:239216/149‑1 (MQ=255)    ctAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATg                                                                                                                                                   <  2:693359/149‑1 (MQ=255)           aCTGAGCTACGTAGCCAGATTGGTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGTAGAAGATGGCTgggg                                                                                                                                            <  2:239218/149‑1 (MQ=255)                 cTACGTAGCCAGATTGTTTCTTCTATGGCTTGGGTACCTTGATTCGACCCAGGTAATGACGGTATCAATACACGGCTCCTTACCGCGTGCCGATACCCCAATAACCGTGCTTCGAACCGCGTACTCGAAGAAGATGGCTGGGGTACCTg                                                                                                                                      <  2:239219/149‑1 (MQ=255)                                                            tCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATgg                                                                                                                                                  >  1:239225/1‑94 (MQ=17)                                                            tCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATgg                                                                                                                                                  <  2:239225/94‑1 (MQ=17)                                                            tCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCTAAGATGCTGGCTGGGGTACCTGGCTACGCAGCAGGGAATGCCGGGATCAAAAACAGGGGCCttca                                                                                           >  2:239259/1‑147 (MQ=25)                                                                     ggAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCg                                                                                  >  2:239276/1‑149 (MQ=255)                                                                        aTGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATa                                                                               >  1:239281/1‑149 (MQ=255)                                                                            cGGAATCATAATCCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGa                                                                                                                               <  2:239227/97‑1 (MQ=255)                                                                             ggaaTCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAAAAACCTGGCGGTGAACATCAAACTCGAATAAGATGGCTGCGGTAGATGGATTCGaa                                                                                                                              >  1:239227/4‑97 (MQ=12)                                                                                        ccGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTgg                                                                                                                                              <  1:239228/70‑1 (MQ=255)                                                                                                        tGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATgg                                                >  1:239266/1‑148 (MQ=255)                                                                                                                   cAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCga                                    >  1:239285/1‑149 (MQ=255)                                                                                                                    aaTAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCg                                     >  1:719928/1‑147 (MQ=255)                                                                                                                    aaTAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGAGCGGGAGGCgag                                   >  1:239255/1‑149 (MQ=255)                                                                                                                      tAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGAc                                 >  2:239298/1‑149 (MQ=255)                                                                                                                         ccGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTg                              >  2:239284/1‑149 (MQ=255)                                                                                                                                      cGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCt                 >  1:239319/1‑149 (MQ=255)                                                                                                                                       gCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCg                        >  1:239280/1‑141 (MQ=255)                                                                                                                                        cTTACTCGAAGAAGATGGCTGGGGTACCTGGCTTCGAACCAGGGAATGCCGGTATCAAAGACCGGTGCCTTACCGCTTGGCGATACCCCCTCCGTACAACGCTATCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTg               >  2:239300/1‑149 (MQ=255)                                                                                                                                        cTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTg               >  2:239309/1‑149 (MQ=255)                                                                                                                                              cgaattagaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTgc              <  2:1188194/138‑1 (MQ=255)                                                                                                                                               ttcgtcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGcac                     <  1:239239/130‑1 (MQ=255)                                                                                                                                                 agaagaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAACCCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGACCTCGCACACCTTGCGGCGCCAg      >  2:285341/1‑149 (MQ=255)                                                                                                                                                  ttcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGGCGAGCGCTGTCTCGAGAAGGGTGCGGGGGGCGAGCCTGGAACTCGCACCCCTTGCGgcgca        >  2:239272/4‑145 (MQ=17)                                                                                                                                                   tcgaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGGCCAGCGGTTTCTCGGGAATGGTGAGAGGGTCGCGACGGGACCTCGCACACCTTGCGGCGccggca    >  2:239265/3‑145 (MQ=14)                                                                                                                                                    agaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCgg                                                                                                   <  1:239233/53‑1 (MQ=31)                                                                                                                                                    agaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAACGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAAc   <  2:670571/149‑1 (MQ=255)                                                                                                                                                     gaTGGCTGGGGTACCTGGATTCGACCCAGGGAATGCCGGTATCATAATCCGGTGCCTGACCGCTTGGAGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAAcc  <  2:239240/149‑1 (MQ=37)                                                                                                                                                     gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATc                                                                        <  1:239237/79‑1 (MQ=32)                                                                                                                                                     gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGa                                         <  1:239244/110‑1 (MQ=255)                                                                                                                                                     gaTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAgg                                       <  1:239242/112‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCATCCGTACAACGCTTTCTGGTGAATGGTGCGGGAGGCGAGACTTGAACTCGCACACCTTGCGGCGCCAGAACC  >  U00096/696715‑697011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.