New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	U00096	= 2560972	51 (0.490)	4 (0.040)	4/252	13.1	9.0%	intergenic (+74/‑396)	yffL/yffM	uncharacterized protein YffL/uncharacterized protein YffM
	?	U00096	2561043 =	37 (0.420)					intergenic (+145/‑325)	yffL/yffM	uncharacterized protein YffL/uncharacterized protein YffM
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATCAGGCGGGCAATGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCG  >  U00096/2560901‑2561190                                                                                                                                               |                                                                                                                                                    gAATCCGCCCGGCATTTTTCCAGACTTTTGTTTGCCTTAATTACATGAATTCAGCGGGGTCAAAAGATGGCTTTATTGGGGGGTCAATAGTTGCCTTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGa                                                                                                                                               <  2:883154/149‑1 (MQ=21)            gCAATGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCCGGTGGGTCAAAAGTAGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTAtt                                                                                                                                    <  1:883151/149‑1 (MQ=255)              atttttCCAGCCTTTCGTTTTCCTTAAATCCATGAATTCCGGTGGGTCAAAATTTGCCTTTAGTGGTGGGTCAAAAGTTGCCTTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTaa                                                                                                                                  <  2:883156/145‑1 (MQ=25)               aTGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCTAAAGTTGCCGAGTAAGAATTCTACTATTaa                                                                                                                                  >  1:1435400/1‑148 (MQ=255)                tGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGAGGGTCAAAATTTGCCGTTAAGGGGGGTCTAATTTTGACGACAAAGAATTCTACAATTa                                                                                                                                   >  1:883207/1‑146 (MQ=37)                tGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAACTCAGGTGGGTCAAAAGTTGCCGTTATTGATGTGTCAAAAGTTGCATTAAAGGAGGCTCAAAAGTTGAAGAAAAGCTGGGTCTAATATAGAGGAGAAAGAATTCTACAAtaa                                                                                                                                   >  2:883213/1‑144 (MQ=255)                           tttCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTTGGTCAAATGTTGCCGTTAAGGTGGGTCAAAATTTGAAGTGTAGGTGGGTGAAAAATTGCCTAGAAAGGATTGTACAATTAAGAATTATAcgcgt                                                                                                                     >  2:883217/1‑148 (MQ=21)                              cTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGACGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATAATAGGCGACgg                                                                                                                  >  2:883241/1‑149 (MQ=255)                                   ccTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGTGTCAAAAGTTGCCTTAAAGGAGGGTCAAAAGTTGCAGTGTAGGTGGCTCAAATATTGACGAGTAATAATTATAAAATTAAAAATAATAGGCGGCGGGAGtt                                                                                                             >  2:883206/1‑149 (MQ=21)                                                  ttCAGTTGGGTTTAATGTTGCCGTTACTGGTGGGTAAATAGTTGCCTTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCcggn                                                                                              <  2:883157/149‑2 (MQ=37)                                                          gcttaaaaTTAGCCTTTACTGGTGGGTCAAAACTAGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATa                                                                                      <  2:883158/145‑1 (MQ=37)                                                                  gTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTTCCGAGTAAGAATTCTACTATTTAGAATTCTAGGCGACGGTAGTTTTTTAGACTCCCGCTCGGTCATAGAGAGTCg                                                                              >  2:883218/1‑149 (MQ=38)                                                                       cGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTag                                                                         >  1:883256/1‑149 (MQ=255)                                                                         ttAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTagag                                                                       >  1:883222/1‑149 (MQ=255)                                                                            gtggtgGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCAGTTAAGGTGGGACAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCACGGTCGGTCATAGAGAGTCGCCTAGAGTTa                                                                    >  2:883223/1‑149 (MQ=255)                                                                             tggtggGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCGACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGTGAGGCGCCTAGAGTTaa                                                                   >  1:883239/1‑149 (MQ=255)                                                                               gtggGTAATTAGTTGCCTTTTAGGTGGGTTAAATGTTTCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAAc                                                                 <  2:883163/149‑1 (MQ=255)                                                                                tggGTAAAATGTGGCCTTTTAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACa                                                                <  2:883172/149‑1 (MQ=39)                                                                                 gggTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACag                                                               <  1:883160/149‑1 (MQ=255)                                                                                  ggTCAAATGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACaga                                                              <  2:883162/149‑1 (MQ=255)                                                                                       aaaGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAat                                                         >  1:883233/1‑149 (MQ=255)                                                                                             gCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTc                                                   >  1:883221/1‑149 (MQ=255)                                                                                                gTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTctcc                                                >  2:883227/1‑149 (MQ=255)                                                                                                      gTGGGTAAAATGTTGCCTTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCgccgcc                                             <  2:883175/146‑1 (MQ=255)                                                                                                         ggTCAAAAGTTTCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTg                                           <  1:883181/145‑1 (MQ=255)                                                                                                           tCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGt                                     >  2:883226/1‑149 (MQ=255)                                                                                                           tCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGt                                     <  1:883182/149‑1 (MQ=255)                                                                                                            cAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAgg                                      >  1:883252/1‑147 (MQ=255)                                                                                                                tgTTGCCGTTCAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCt                                <  2:883183/148‑1 (MQ=255)                                                                                                                aGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCt                                >  1:883243/1‑149 (MQ=255)                                                                                                                 gTTGCCGTTAAGGTGGGTCAAAAGTTGCAGAGTAAGAATTCTACTATAAAGAATTCTAGGACACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATATCGCCGCCTGATAGGTCGGCTg                               >  1:883228/1‑149 (MQ=255)                                                                                                                    gCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTa                                                                    <  1:883185/109‑1 (MQ=255)                                                                                                                     ccGTTCAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCcggt                                                                                              <  1:883186/82‑1 (MQ=255)                                                                                                                      cGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATag                                                                                     >  1:883251/1‑90 (MQ=255)                                                                                                                      atttAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGc                          <  2:883190/147‑1 (MQ=255)                                                                                                                       gTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTctac                                                                                                                                        <  1:883187/38‑1 (MQ=255)                                                                                                                       gTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCg                         <  2:883188/149‑1 (MQ=255)                                                                                                                         tAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAg                       <  1:883192/149‑1 (MQ=255)                                                                                                                           aGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCggtcggtc                                                                                         <  1:883201/81‑1 (MQ=255)                                                                                                                           aGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCa                                                                                        <  1:883200/82‑1 (MQ=255)                                                                                                                           aGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTaa                                                                   <  1:883199/103‑1 (MQ=255)                                                                                                                           aGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCa                     <  2:883193/149‑1 (MQ=255)                                                                                                                            ggTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAAc                                                                 <  1:883202/104‑1 (MQ=255)                                                                                                                             gTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGc                      >  1:883240/1‑146 (MQ=255)                                                                                                                               gggTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGCCGGGTGTTTTTTAGCCTCCCGGTCGGTCATAGAGCTTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCGTGAGTGGTCGGCTGGTTGCGAGCATTaa                 >  2:883254/1‑149 (MQ=255)                                                                                                                               gggTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAAc                                                                 <  1:883203/101‑1 (MQ=255)                                                                                                                                ggTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTa                                                                    <  1:883204/97‑1 (MQ=255)                                                                                                                                 gTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTa                                                                                                        <  1:883205/60‑1 (MQ=255)                                                                                                                                 gTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGc                                 <  1:883206/131‑1 (MQ=255)                                                                                                                                       aGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTg         <  2:883207/149‑1 (MQ=255)                                                                                                                                        gTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGa        <  1:883208/149‑1 (MQ=255)                                                                                                                                        gTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGATTGCGAGCATTAACCATGCTGa        >  1:883247/1‑149 (MQ=255)                                                                                                                                           gCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTa     <  2:883209/149‑1 (MQ=255)                                                                                                                                             cGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAgg   <  2:883210/149‑2 (MQ=255)                                                                                                                                             cGAGGAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGGTTTTTAGCCTCCCGGTCGGTCATAGAGAGTc                                                                               <  1:883211/73‑1 (MQ=255)                                                                                                                                              gAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAgcg  >  2:883237/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    GAATCAGGCGGGCAATGTTCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGTGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGTTAAGGTGGGTCAAAAGTTGCCGAGTAAGAATTCTACTATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCG  >  U00096/2560901‑2561190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.