Predicted mutation
evidence seq id position mutation annotation gene description
MC JC U00096 1,397,381 Δ13,756 bp [ynaJ][ttcA] 17 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 1397381 1411136 13756 87 [0] [0] 88 [ynaJ]–[ttcA] [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,ynaN,zntB,fnrS,ynaL,dbpA,[ttcA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 = 13973800 (0.000)87 (0.850) 73/290 0.5 100% coding (16/258 nt) ynaJ DUF2534 domain‑containing protein YnaJ
?U00096 1411137 = 0 (0.000)coding (812/936 nt) ttcA tRNA cytosine(32) 2‑sulfurtransferase TtcA

CCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATGTAT  >  U00096/1397233‑1397523
                                                                                                                                                   |                                                                                                                                               
ccTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACa                                                                                                                                                <  1:476595‑M1/149‑2 (MQ=255)
     ccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttca                                                                                                                                           >  2:476621‑M1/1‑143 (MQ=255)
     ccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttc                                                                                                                                            <  1:476598‑M1/148‑6 (MQ=255)
        aactaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaa                                                                                                                                        <  1:476599‑M1/149‑10 (MQ=255)
         actaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                                                                       >  2:476645‑M1/1‑139 (MQ=255)
          ctaaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaacc                                                                                                                                      <  2:476600‑M1/149‑12 (MQ=255)
            aaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                                                                    <  2:476601‑M1/149‑14 (MQ=255)
            aaTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                                                                    <  1:476602‑M1/149‑14 (MQ=255)
             aTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAATGGTGAAATGTCATCGTATTGTTACGATTAAGTAACAAGAAATTTGTCTGCACAAGGATAACATCATGATTATCGCGAAACacatcagaaccgac                                                                                                                                   >  2:476640‑M1/1‑135 (MQ=255)
              tCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgg                                                                                                                                  <  1:476603‑M1/149‑16 (MQ=255)
               cAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtggg                                                                                                                                 <  1:476604‑M1/149‑17 (MQ=255)
                aaTGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggt                                                                                                                                >  1:476619‑M1/1‑132 (MQ=255)
                    cGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                                                                            >  2:476626‑M1/1‑128 (MQ=255)
                    cGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgat                                                                                                                             <  1:476605‑M1/148‑21 (MQ=255)
                     gTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgc                                                                                                                           >  2:476656‑M1/1‑127 (MQ=255)
                     gTTGATTGTAAATCCAGCTAAGAGGTGAGGATTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                                                                            >  1:476644‑M1/1‑127 (MQ=255)
                       tGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcct                                                                                                                         >  2:476630‑M1/1‑125 (MQ=255)
                         aTTGTAAATCCAGCTAAGAGGTGTGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTTCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgccttt                                                                                                                       <  2:476606‑M1/149‑27 (MQ=255)
                          ttGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttg                                                                                                                      <  2:476607‑M1/149‑28 (MQ=255)
                                  ccAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                                                              <  1:476608‑M1/149‑36 (MQ=255)
                                  ccAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                                                              <  1:476609‑M1/149‑36 (MQ=255)
                                      cTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacagg                                                                                                          <  2:476610‑M1/149‑40 (MQ=255)
                                       tAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                                                                         >  2:476622‑M1/1‑109 (MQ=255)
                                          gaggtgaggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttgg                                                                                                      >  1:476668‑M1/1‑106 (MQ=255)
                                                aggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgc                                                                                                >  2:476663‑M1/1‑100 (MQ=255)
                                                 ggtTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGCTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgc                                                                                                >  1:476611‑M1/1‑99 (MQ=255)
                                                   ttttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                                                             <  2:476612‑M1/149‑53 (MQ=255)
                                                     ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacaga                                                                                           <  1:476613‑M1/149‑55 (MQ=255)
                                                     ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacaga                                                                                           <  1:476614‑M1/149‑55 (MQ=255)
                                                     ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcac                                                                                              >  2:476635‑M1/1‑95 (MQ=255)
                                                     ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcac                                                                                              >  1:476650‑M1/1‑95 (MQ=255)
                                                      tCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagat                                                                                          <  2:476615‑M1/149‑56 (MQ=255)
                                                           gCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgc                                                                                        >  1:476634‑M1/1‑89 (MQ=255)
                                                            cAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacg                                                                                    <  2:476617‑M1/149‑62 (MQ=255)
                                                            cAGAAAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacg                                                                                    <  1:476616‑M1/149‑62 (MQ=255)
                                                             aGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacgg                                                                                   >  2:476638‑M1/1‑87 (MQ=255)
                                                                cAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcac                                                                                >  1:476670‑M1/1‑84 (MQ=255)
                                                                 aaCGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacc                                                                               <  2:476618‑M1/149‑67 (MQ=255)
                                                                      tGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacatt                                                                          >  1:476647‑M1/1‑78 (MQ=255)
                                                                       gAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                                                                         >  2:476642‑M1/1‑77 (MQ=255)
                                                                           tGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgc                                                                      <  1:476625‑M1/148‑76 (MQ=255)
                                                                            gTCATGGTATTGTTACGTTTAGGTAACAAGAAATTAGTCTGCACAAGGATTACATCATGAGTATGGAGAAACacatcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgtcggcaccacatactgcat                                                                    >  2:476720‑M1/1‑72 (MQ=255)
                                                                             tCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatc                                                                   <  2:476627‑M1/149‑79 (MQ=255)
                                                                              cATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcg                                                                  >  2:476684‑M1/1‑70 (MQ=255)
                                                                              cATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcat                                                                    <  1:476624‑M1/147‑78 (MQ=255)
                                                                                 ggTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgc                                                               <  2:1083022‑M1/149‑83 (MQ=255)
                                                                                    aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacagggtggtatcgcacagatgcgacggcaccacattctgcatcgcgctga                                                            <  2:476620‑M1/149‑86 (MQ=255)
                                                                                    aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgccttagaaatcgaacaggttggtatcgcacagatgcgacggcaacacattctgcatcgcgctga                                                            >  1:476660‑M1/1‑64 (MQ=255)
                                                                                     ttGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaa                                                           >  1:476636‑M1/1‑63 (MQ=255)
                                                                                      tGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaac                                                          <  1:476629‑M1/149‑88 (MQ=255)
                                                                                        ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacat                                                        <  1:1548939‑M1/149‑90 (MQ=255)
                                                                                        ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacat                                                        >  1:476643‑M1/1‑60 (MQ=255)
                                                                                        ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacat                                                        >  2:1445534‑M1/1‑60 (MQ=255)
                                                                                         tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAGACacttcagaaccgtgggtgatgccgttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgcacatc                                                       >  2:476664‑M1/1‑59 (MQ=255)
                                                                                         tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc                                                       <  2:476628‑M1/149‑91 (MQ=255)
                                                                                          aCGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcg                                                      >  2:476675‑M1/1‑58 (MQ=255)
                                                                                            gTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc                                                    >  2:476654‑M1/1‑56 (MQ=255)
                                                                                            gTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc                                                    >  2:476649‑M1/1‑56 (MQ=255)
                                                                                                 ggTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgat                                               >  2:476674‑M1/1‑51 (MQ=255)
                                                                                                 ggTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgat                                               >  1:476695‑M1/1‑51 (MQ=255)
                                                                                                  gTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgata                                              <  1:476621‑M1/149‑100 (MQ=255)
                                                                                                     aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcggaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgc                                           >  1:476682‑M1/1‑47 (MQ=255)
                                                                                                     aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgc                                           >  2:476700‑M1/1‑47 (MQ=255)
                                                                                                      cAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgcc                                          >  1:476639‑M1/1‑46 (MQ=255)
                                                                                                      cAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgcc                                          >  2:476657‑M1/1‑46 (MQ=255)
                                                                                                       aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccc                                         >  2:476662‑M1/1‑45 (MQ=255)
                                                                                                        aGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccct                                        >  1:476672‑M1/1‑44 (MQ=255)
                                                                                                           aaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacca                                                                              >  2:476633‑M1/1‑41 (MQ=255)
                                                                                                           aaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacca                                                                              <  1:476633‑M1/108‑68 (MQ=255)
                                                                                                            aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctg                                       <  1:476632‑M1/146‑107 (MQ=255)
                                                                                                               tGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctgga                                     >  1:476669‑M1/1‑37 (MQ=255)
                                                                                                                gTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacg                                <  1:476626‑M1/149‑114 (MQ=255)
                                                                                                                    gCACAAGGATTACATCATGATTATGGCGAAACatttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgttta                            >  2:476692‑M1/1‑32 (MQ=255)
                                                                                                                    gCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgttta                            >  2:476667‑M1/1‑32 (MQ=255)
                                                                                                                      acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatc                          >  2:476651‑M1/1‑30 (MQ=255)
                                                                                                                      acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgagctgaacatcgtctcgatacgccctggataacgtttatc                          >  2:476698‑M1/1‑30 (MQ=255)
                                                                                                                         aGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatccca                       <  1:476631‑M1/149‑123 (MQ=255)
                                                                                                                           gATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagt                     <  2:476623‑M1/149‑125 (MQ=255)
                                                                                                                           gATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagt                     >  2:476673‑M1/1‑25 (MQ=255)
                                                                                                                             ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtca                   <  2:476619‑M1/149‑127 (MQ=255)
                                                                                                                             ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtca                   >  1:476658‑M1/1‑23 (MQ=255)
                                                                                                                                    atGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaaca            >  1:476652‑M1/1‑16 (MQ=255)
                                                                                                                                    atGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaaca            >  1:476655‑M1/1‑16 (MQ=255)
                                                                                                                                        ttATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgtc        <  1:476622‑M1/149‑138 (MQ=255)
                                                                                                                                          aTGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgtcag      <  1:476630‑M1/149‑140 (MQ=255)
                                                                                                                                             gCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgtcagcaa   >  1:476678‑M1/1‑7 (MQ=255)
                                                                                                                                                aaaCacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgatacgccctggataacgtttatcccagtcacgcaacatgtcagcaat  >  1:476705‑M1/1‑4 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
CCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATGTAT  >  U00096/1397233‑1397523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: