mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 34.8% | 184.1 / 187.9 | 178 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 2,560,996 | 0 | G | T | 26.2% | 184.9 / 19.7 | 103 | intergenic (+98/‑372) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| * | U00096 | 2,947,467 | 0 | A | C | 22.9% | 134.7 / 38.2 | 62 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,287,009 | 0 | A | T | 21.6% | 283.3 / 42.0 | 134 | intergenic (+25/+57) | ychS/rttR | putative uncharacterized protein YchS/small RNA RttR |
| * | U00096 | 2,947,591 | 0 | A | . | 21.3% | 132.5 / 32.8 | 47 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 2,947,465 | 0 | T | . | 20.8% | 216.9 / 53.9 | 77 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,708,844 | 0 | C | G | 20.4% | 85.7 / 14.6 | 56 | A642A (GCC→GCG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 1,552,191 | 0 | C | A | 20.2% | 415.4 / 31.4 | 168 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase N subunit gamma/DNA‑binding transcriptional regulator YddM |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 75 (0.290) | 50 (0.210) +GAAGAAACAATC |
22/268 | 19.6 | 23.3% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 283 (1.080) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | = 4542690 | 388 (1.480) | 22 (0.090) | 21/274 | 20.4 | 6.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 308 (1.250) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 1287084 | 75 (0.290) | 42 (0.190) | 17/252 | 21.0 | 24.4% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 196 (0.860) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 158 (0.600) | 43 (0.160) +G |
20/290 | 21.7 | 26.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521128 | 79 (0.300) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 4542682 = | 393 (1.490) | 20 (0.080) | 18/274 | 21.8 | 5.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 308 (1.250) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781369 = | 158 (0.600) | 36 (0.140) +GAG |
15/286 | 24.0 | 22.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 100 (0.380) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 75 (0.290) | 10 (0.040) | 5/254 | 28.9 | 6.9% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 206 (0.900) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | = 2818077 | 213 (0.810) | 3 (0.010) | 3/252 | 30.7 | 1.7% | noncoding (59/77 nt) | argZ | tRNA‑Arg |
| ? | U00096 | 2818358 = | 166 (0.730) | intergenic (‑84/+115) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | U00096 | 3536486 = | 294 (1.120) | 3 (0.010) | 3/288 | 32.7 | 0.99% | coding (99/720 nt) | ompR | DNA‑binding transcriptional dual regulator OmpR |
| ? | U00096 | = 3609869 | 309 (1.190) | coding (653/666 nt) | yhhQ | queuosine precursor transporter | |||||
| * | ? | U00096 | 681402 = | 296 (1.130) | 3 (0.010) | 3/288 | 32.7 | 0.96% | coding (1191/1452 nt) | djlC | co‑chaperone DjlC |
| ? | U00096 | = 1045654 | 326 (1.260) | coding (150/1140 nt) | gfcE | putative exopolysaccharide export lipoprotein GfcE | |||||