Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*U000961,708,9300CA21.9% 213.7 / 13.7 105P671Q (CCG→CAG) rsxCSoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base C (55/27);  new base A (15/8);  total (70/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

GTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCC  >  U00096/1708785‑1709078
                                                                                                                                                 |                                                                                                                                                    
gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGAGCAAAGGCCAGAAAACGCGACCAGCAACAgga                                                                                                                                                   >  2:1396752/1‑148 (MQ=14)
    aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCATCCGGGTACAGCAACCCGGTAAt                                                                                                                                               >  2:3049744/1‑149 (MQ=14)
    aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTAGCCGCCGCTATTGCCCGCGCGCACGCCCGAAAACGCGCACAGCACCCGGCGaaa                                                                                                                                               >  2:1396727/1‑148 (MQ=14)
    aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTCGAAGCGGCTATTGACCGCGCCACAGCGCGAAAACTGGAACAGCGACCGGCTaag                                                                                                                                               >  2:1396717/1‑148 (MQ=14)
     agcagcTATTGCCCTTGACACCGCGCGCAAGCTGGAACAGCATCATGCTAAAGACGACCCAGAACCCCAGGTAGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                                                                                                                                              <  2:1396617/149‑1 (MQ=14)
       ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATCCGCGCAAAGCGGCAGTCGCCGCGGCTATTGCCCGAGCAAAGGCCCGCAAAGCGGCCCAGCACCAGGGTAATGcc                                                                                                                                            >  2:1396720/1‑148 (MQ=11)
        cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCGCACGCGACCAGCAACCGGCTAATGAgg                                                                                                                                           >  1:1396722/1‑149 (MQ=14)
             ttGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCAAAAGCGCGCAAACGCGAACAGCAGCAGGCTAATGAGGACCCa                                                                                                                                      >  2:1396709/1‑149 (MQ=14)
                ccccTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATTCCTAGCCAGCACAACACCTCTATCCTCGCAACGCCGCCGTCGCCGCCGCCATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCagaa                                                                                                                                   <  2:1396613/149‑1 (MQ=14)
                 ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTATTGCCCGCGCACAGGACCGCAGACGGGAGCAGCAGCAGGCTAATGCGGACCCggaag                                                                                                                                  >  2:1396738/1‑149 (MQ=14)
                 ccGCGCCAAAGCGCGCAAGCTGGAACAGCAACATTCTAATGCGGATCCAGAACAACAGGTCGATCCTCGCAAAGCCTCCTCCGAAGCCTCTATTTCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCTagaag                                                                                                                                  <  2:1396614/149‑1 (MQ=11)
                       cAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAACAACAGGTAGATCCGACCAAAGCCGCACTAGAAGCCGCTATTGCACGAGCAAAAGCGAGCAAGAGTGAACAGCAAAAGGCTAATGCGGAGCCAGAAGAACAgg                                                                                                                            >  2:1396742/1‑149 (MQ=11)
                              cGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCAGCGCAAAGACGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCGCGCAATCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGGTgggcc                                                                                                                     >  2:1396753/1‑145 (MQ=14)
                                   gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGACGACGTCGAAAACACTATAGAACGCGCAAAAGCGCGCAAACTGAAACATCAACAGGCTAATGCGGGGCCAGAAGAGGAGGTGGATCggcgga                                                                                                                >  2:1396761/1‑147 (MQ=2)
                                      ggAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGAACCCATCAGAGACGATATTGCAATAGCAAAAGCTCTCAATCGTGAACAGCAAAATAATAATACGGAGCCAGAAGAACAGGTTGATCCGCGCAAAg                                                                                                             >  2:1396766/1‑149 (MQ=9)
                                            gCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATAGCACGAGCCAAAGCGCGCAAACGGGTACACCAACCGGCTAATGATGAGCCAGAAGAACATGAAGATCAGCCCAAAGCAGCCg                                                                                                       >  2:1396622/1‑149 (MQ=14)
                                               aCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGtag                                                                                                    >  2:1396773/1‑147 (MQ=255)
                                                 aGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGaa                                                                                                  >  2:1396705/1‑149 (MQ=255)
                                                  ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCAGAGCCAAAGCGCGCAAGAGGGAACAGCAAACGGCTAATGCGGAGACAGAAGAACAGGTAGATCCGCTCAAAGCTGCCGTGGAAg                                                                                                 >  1:1396684/1‑149 (MQ=14)
                                                     tAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAGCAGGTGGATCCGCGCAAAGCGGCAGTAGACGCgg                                                                                              >  2:1396810/1‑149 (MQ=14)
                                                         gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCCGCGGCtgt                                                                                          >  2:1396685/1‑147 (MQ=255)
                                                              gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCAAACGCGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTGGCAGCGGCTATTGCAc                                                                                     >  2:1396787/1‑149 (MQ=14)
                                                               ccAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGc                                                                                                                                             <  1:1396625/92‑1 (MQ=255)
                                                                cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGACGGGCTGCCGTCGAGGAGGCTATTGCAcga                                                                                   >  2:1396686/1‑148 (MQ=14)
                                                                cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTa                                                                                                                                                 <  2:1396626/87‑1 (MQ=255)
                                                                cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTa                                                                                                                                                 >  1:1396626/1‑87 (MQ=255)
                                                                  gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACGCGAACAGCAACAGGCTAATACGGAACCAGAACAACAGGTTGATCCACTCAAAGCTGCAGTAGCAGCGCCTAATGCAcgcac                                                                                 >  2:1396719/1‑147 (MQ=14)
                                                                  gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCACCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc                                                                                 >  1:1396808/1‑149 (MQ=14)
                                                                  gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCgg                                                                                                                                           >  1:1396627/1‑91 (MQ=255)
                                                                       acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGAAGCGGCTATTGCACgcgcgcagg                                                                            >  1:1396692/1‑144 (MQ=255)
                                                                       acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                                                                                                                 <  2:1396635/96‑1 (MQ=255)
                                                                       acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                                                                                                                 >  1:1396635/1‑96 (MQ=255)
                                                                               aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCTAGCCAAAGCTCGCAACCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGGCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg                                                                    <  2:2418966/149‑1 (MQ=14)
                                                                               aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTg                                                                                                                         <  1:1396640/96‑1 (MQ=255)
                                                                               aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGACGCGGCTATTGCACGCGCAAACGCACGaaa                                                                     >  1:1396822/1‑148 (MQ=17)
                                                                                tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGCAGCGGCTATTGCCCGCGCAAAAGCACGCAAGc                                                                   >  2:1396728/1‑149 (MQ=14)
                                                                                  cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg                                                                                                                                                     >  1:1396641/1‑65 (MQ=255)
                                                                                  cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg                                                                                                                                                     <  2:1396641/65‑1 (MQ=255)
                                                                                   gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg                                                                >  1:1396718/1‑149 (MQ=255)
                                                                                       aaaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCaaa                                                                                                              <  2:1396645/99‑1 (MQ=255)
                                                                                            cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag                                                                                                                                  <  1:1396647/74‑1 (MQ=255)
                                                                                             gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCAAACGCACGCAAGCGGGAACAGCacaa                                                      >  1:1396814/1‑146 (MQ=17)
                                                                                             gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGCAGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACa                                                      >  2:1396809/1‑149 (MQ=255)
                                                                                             gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAGGCACGCAAGCTCGAACAGCaaaa                                                      >  2:1396747/1‑147 (MQ=255)
                                                                                             gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTAGCCGCGGCTATTGCACGCGCCAAGGCCCGCAAGCAGGCACAGCAACa                                                      >  2:1396784/1‑149 (MQ=17)
                                                                                             gccgTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa                                                                                                                                                <  1:1396648/59‑1 (MQ=255)
                                                                                              ccgTCGATGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGAGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                                                      >  1:2971340/1‑148 (MQ=255)
                                                                                              ccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGCAGCGGCTATTGCACGCGCACAAGCACGCAAGGGGGCAcagcagcag                                                     >  1:1396791/1‑149 (MQ=17)
                                                                                               cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGc                                                                                                         <  1:1396656/96‑1 (MQ=255)
                                                                                               cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg                                                                                                                             >  2:1396655/1‑76 (MQ=255)
                                                                                               cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg                                                                                                                             <  1:1396655/76‑1 (MQ=255)
                                                                                               cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCAAAAGCACGCAAGCTCGAACAGCAGCAgg                                                    >  2:1396785/1‑149 (MQ=255)
                                                                                                  cGAAGCCGCTATTGCCCGAGCCAAAGCTCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa                                                                      <  1:1396657/128‑1 (MQ=255)
                                                                                                   gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCgcgc                                                                                                                 <  1:1396658/84‑1 (MQ=255)
                                                                                                      gCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGc                                             >  2:1396659/1‑149 (MQ=255)
                                                                                                        cGCTATTGCCCGAGCCAAAGCGCGCAATCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGc                                                                                                         <  2:1396660/87‑1 (MQ=255)
                                                                                                         gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                                                 >  1:1396807/1‑110 (MQ=255)
                                                                                                          cTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGTACAGGTTGATCCGCTGAACGCTGCCGTCGATGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGc                                                   <  1:1396661/139‑1 (MQ=17)
                                                                                                          cTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATc                                                                                                                      <  1:1396662/72‑1 (MQ=255)
                                                                                                           tATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                                                 >  1:1396827/1‑108 (MQ=255)
                                                                                                           tATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACCCAAGCTGGAACAGCAACAGGCTAATGCGGAAc                                        >  2:1396797/1‑149 (MQ=255)
                                                                                                           tATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGAAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCCACAGGCTAGCGCggaag                                        >  2:1396661/1‑146 (MQ=17)
                                                                                                             ttGCCCGAGCCAAAGCTCGCAATCGGGATCAGCAACAGGCTTATGCTGAGCCAGAAGAACAGGCGGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa                                      <  1:1396663/149‑1 (MQ=14)
                                                                                                             ttGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGCCCAGCACCAGGCTAATGCGGTACCa                                      >  2:1396824/1‑149 (MQ=255)
                                                                                                                cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCTCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                                                >  1:1396664/1‑136 (MQ=255)
                                                                                                                cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                                                <  2:1396664/136‑1 (MQ=255)
                                                                                                                  cGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga                                    >  1:1396842/1‑146 (MQ=255)
                                                                                                                  cGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCaga                                    >  1:1396757/1‑146 (MQ=255)
                                                                                                                   gAGCCAAAGCGCGCAAACGTGAACAGCAACCGGCTAATGCgg                                                                                                                                           <  2:1396631/42‑1 (MQ=255)
                                                                                                                   gAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                                                 >  1:1396778/1‑100 (MQ=255)
                                                                                                                    aGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc                               >  2:1396771/1‑149 (MQ=255)
                                                                                                                    aGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc                               >  1:1396825/1‑149 (MQ=255)
                                                                                                                     gcaaaaGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGCACAGCAACAGGCTAATGCGGTACCagaaga                                 >  1:1396799/4‑146 (MQ=255)
                                                                                                                     gCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                                                                                                                                              <  1:1396666/37‑1 (MQ=255)
                                                                                                                      ccAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg                             >  2:1396831/1‑149 (MQ=255)
                                                                                                                      ccAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAGGCAATCAAGCAGGAACAGCAACAGGCTTATGCGGAGCAAGAAGAACaa                             >  2:1396769/1‑148 (MQ=25)
                                                                                                                       cAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAgg                            >  2:1396828/1‑149 (MQ=255)
                                                                                                                        aaaGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAgaagaa                                                                                                                                >  2:1396668/1‑48 (MQ=255)
                                                                                                                        aaaGCCCGCAACCTGGAACAGCAACAGTCTATTGCCGAGCCAGAATAACAGGTCTATCCGCGCAACTCTGCCTTCGTAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGt                           <  2:1396669/149‑1 (MQ=11)
                                                                                                                          aGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                                                                                                                 <  1:1396670/45‑1 (MQ=255)
                                                                                                                            cgcgcAAACGGGAACATCAACCTTCTATTGCTGTGCCTGATCATCACGTTGATCCGGGGAATGCTGGCGTCGAATGGGCTATTGCTCTCTCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa                        <  1:1396742/148‑1 (MQ=12)
                                                                                                                             gcgcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAGGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATc                      >  2:1396750/1‑149 (MQ=255)
                                                                                                                               gcAATCGGGAACAGCAACAGGCTAATGCGGAGTCAGAAGAACAGGTTGATCCGCGCaaa                                                                                                              <  1:1396671/59‑1 (MQ=14)
                                                                                                                               gcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCCCGCGCGAAGGCCCGCAAGCACGAACAGCAGCAGGCTAATGCCGTACCTCAGGAGCGGGTGGATCcg                    >  2:1396756/1‑149 (MQ=18)
                                                                                                                               gcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcg                    >  1:1535906/1‑149 (MQ=255)
                                                                                                                                   aCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGACGCGGCTATTGCACGCGCAAAAGCACGAAAGCTCGACCAGCAACAGGATAATGCGGTACCAGAAGAACAGGTAGATCCGCGCa                >  2:1396736/1‑149 (MQ=25)
                                                                                                                                    cGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGACGCGGCTATTGCACgcgc                                                                                 >  1:1396762/1‑83 (MQ=255)
                                                                                                                                      ggAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCaa                                                                                                               <  1:1396672/51‑1 (MQ=255)
                                                                                                                                       gAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCTCAAACCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCTCGCAATCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAg             <  1:2808865/148‑1 (MQ=255)
                                                                                                                                       gAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc            >  2:1396770/1‑149 (MQ=255)
                                                                                                                                           aGCAACAGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaa                                                                              <  1:1396674/79‑1 (MQ=255)
                                                                                                                                           aGCAACAGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg                                                     <  2:1396677/104‑1 (MQ=255)
                                                                                                                                            gCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc                                                                                                                     <  2:1396676/39‑1 (MQ=255)
                                                                                                                                            gCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc                                                                                                                     >  1:1396676/1‑39 (MQ=255)
                                                                                                                                              aaCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGtt     >  2:1396820/1‑149 (MQ=255)
                                                                                                                                              aaCAGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg                                                                    <  1:1396678/86‑1 (MQ=255)
                                                                                                                                               aCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTg    >  2:1396764/1‑149 (MQ=255)
                                                                                                                                               aCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTg    >  1:1396776/1‑149 (MQ=255)
                                                                                                                                               aCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTg    >  2:1396754/1‑149 (MQ=255)
                                                                                                                                                 cGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGTTTGATCCGCGCAAAGCGGCAGTAGcc  >  1:1396749/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
GTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCC  >  U00096/1708785‑1709078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑