| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | U00096 | 1,618,806 | Δ1 bp | coding (103/666 nt) | marC ← | inner membrane protein MarC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 1,618,806 | 0 | T | . | 98.8% | 753.5 / 2.2 | 161 | coding (103/666 nt) | marC | inner membrane protein MarC |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (82/77); total (82/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 161 total aligned reads displayed.
TAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAG > U00096/1618663‑1618949 | tAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcc > 1:1012370/1‑149 (MQ=255)tAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcc < 2:1012285/149‑1 (MQ=255)tAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcc > 2:1012404/1‑149 (MQ=255) aaGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcct > 2:1012340/1‑149 (MQ=255) aaGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcct > 2:1012360/1‑149 (MQ=255) gccgccTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCACCGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcctgc > 2:1012405/1‑149 (MQ=255) gccgccTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTtgcctgc < 2:1012286/149‑1 (MQ=255) cgccTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCa < 1:1012287/149‑1 (MQ=255) gccTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAg > 1:1012377/1‑149 (MQ=255) ccTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAg < 1:1012288/148‑1 (MQ=255) ttcAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGcc > 2:1012395/3‑149 (MQ=255) gCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCa < 2:1012290/149‑1 (MQ=255) cAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCaa < 2:1012291/149‑1 (MQ=255) aaTTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAg > 2:1012369/1‑149 (MQ=255) aTTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTATGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCa > 2:1012336/1‑146 (MQ=255) gCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATa > 2:1012416/1‑149 (MQ=255) gCAGACCGGGAATCGAAATGCCAAATGTATCCATCAACAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATa > 1:1012347/1‑149 (MQ=255) cAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATa < 1:1012294/148‑1 (MQ=255) aGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAAc < 1:1012295/149‑1 (MQ=255) gACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAAcg > 2:1012392/1‑149 (MQ=255) ccGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAAcgcg < 2:1012297/149‑1 (MQ=255) gggAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCCCCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGAc > 2:1012349/1‑149 (MQ=255) aaTCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgt > 1:1012352/1‑149 (MQ=255) aTCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgtt < 2:1012299/149‑1 (MQ=255) tCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgttg > 1:1012382/1‑149 (MQ=255) tCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgttg > 2:1012409/1‑149 (MQ=255) tCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgttg > 2:1012342/1‑149 (MQ=255) gAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAgttgtt > 2:1012355/1‑149 (MQ=255) aaaTGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTa > 1:1012346/1‑149 (MQ=255) aaaTGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTa > 2:1012423/1‑149 (MQ=255) aaaTGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTa < 1:1012301/149‑1 (MQ=255) tGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATg > 2:1012379/1‑149 (MQ=255) aaaTGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGtt > 2:1012363/1‑149 (MQ=255) aaTGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTa < 1:1012303/149‑1 (MQ=255) tGTATCCATCACCAGTTGCCCGGCGTAATACGCCTCCATCATGATGGCAAATACGTACACCGTGGCCATCAACGACTGAGGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAg < 1:1012305/148‑1 (MQ=255) tGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGc < 2:1012304/149‑1 (MQ=255) tATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTa > 2:1012384/1‑149 (MQ=255) aTCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTaa < 1:1012307/149‑1 (MQ=255) tCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAAc < 2:1012309/149‑1 (MQ=255) tCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTC‑TGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAAc < 1:1012310/149‑1 (MQ=255) aTCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGgc > 1:1012433/1‑149 (MQ=255) aTCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGATAATGGGTTAGCTAACGgc < 2:1012312/149‑1 (MQ=255) gTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAaca > 1:1012418/1‑149 (MQ=255) gCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAAcacca < 2:1012314/149‑1 (MQ=255) ccGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACaccacc > 2:1012443/1‑149 (MQ=255) cGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGCCTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACAccacca < 1:1012315/149‑1 (MQ=255) gCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGc < 1:1012317/149‑1 (MQ=255) cGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACaccacc < 1:1012318/145‑1 (MQ=255) tAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGcccc > 1:1012380/1‑149 (MQ=255) aaTACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATACCGCGACAGTTGTTAATGGGTTAGATAACGGCAGCAACACCACCAGCCCCa > 1:1012454/1‑149 (MQ=255) aTACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAg < 2:1012322/149‑1 (MQ=255) aTACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAg < 2:1012321/149‑1 (MQ=255) tACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAGTAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAgg > 1:1012444/1‑149 (MQ=255) gCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCa > 2:1012425/1‑149 (MQ=255) ccaccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCaa < 2:1012324/149‑1 (MQ=255) ccaccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCaa > 1:1012414/1‑149 (MQ=255) caccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAAt > 1:1012385/1‑149 (MQ=255) caccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAAt < 2:1012325/149‑1 (MQ=255) accaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAAtt > 1:1012419/1‑149 (MQ=255) ccaTCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTg > 2:1012378/1‑149 (MQ=255) tcatGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCtt < 1:1012326/149‑1 (MQ=255) catGATGGCAAATACGTACAGCGAGGCCATCAACGTCTGACGATTACGTTCGGCTCTGTTCA‑GTTGCCTGGCAGGCCAAGATATAACGCGACAGTTGTTAATGGGTTAGCTTACGGCAGCAATTCGTCCAGCCCCATGCGAATTGCttt < 2:1012328/149‑1 (MQ=255) tgatgGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTaa > 2:1012373/1‑149 (MQ=255) atgGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAAc > 2:1012394/1‑149 (MQ=255) tgGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACa < 2:1012330/149‑1 (MQ=255) tgGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACa > 1:1012390/1‑149 (MQ=255) gCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACaaa < 1:1012331/149‑1 (MQ=255) cAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAAt > 2:1012421/1‑149 (MQ=255) caaTACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATc > 2:1012391/2‑149 (MQ=255) aTACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGACCAATTGCTTTAAACAAATCTa < 2:1012332/149‑1 (MQ=255) tACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTaa < 1:1012334/149‑1 (MQ=255) tACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTaa > 2:1012426/1‑149 (MQ=255) tACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTaa < 1:1614581/149‑1 (MQ=255) gTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACAt > 1:1012408/1‑149 (MQ=255) acacCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTTCCTGCCAGGCAAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGgcag > 1:1012401/1‑102 (MQ=255) acCGAGGCCATCAACGACTGACGATTATGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATtggt < 1:1012336/149‑1 (MQ=255) acCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATtggt < 1:1012337/149‑1 (MQ=255) cGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATtggt > 1:1012400/1‑147 (MQ=255) gAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTggtggt > 2:1012438/1‑149 (MQ=255) aGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGgtt > 1:1012439/1‑149 (MQ=255) ccATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGgttgtt < 1:1012340/149‑1 (MQ=255) ccATCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGgttgtt < 2:1012339/149‑1 (MQ=255) tCAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCCGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTGGTTATc > 2:1012468/1‑149 (MQ=255) cAACGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATcc > 2:1012411/1‑149 (MQ=255) aaCGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCt > 1:1012410/1‑149 (MQ=255) aaCGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCt < 1:1012342/149‑1 (MQ=255) aCGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCtg < 2:1012343/149‑1 (MQ=255) cGACTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCtgt < 1:1012344/149‑1 (MQ=255) cTGACGATTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTa < 2:1012346/149‑1 (MQ=255) aTTACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTggg < 1:1012349/149‑1 (MQ=255) ttACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGt < 2:1012351/149‑1 (MQ=255) tACGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGtt > 2:1012402/1‑149 (MQ=255) cGTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTAt < 1:1012353/149‑1 (MQ=255) gTTCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGGTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTagc < 2:1012354/149‑3 (MQ=255) ttCGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCa > 2:1012455/1‑149 (MQ=255) cGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGc < 2:1012357/149‑1 (MQ=255) cGGCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGc < 1:1012358/149‑1 (MQ=255) ggCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGc < 1:1012359/148‑1 (MQ=255) gCACTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGa > 1:1012448/1‑149 (MQ=255) aCTGTTCA‑GTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGaaa < 2:1012361/149‑1 (MQ=255) | TAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCAACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGACAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAG > U00096/1618663‑1618949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |