| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 176443 | 199 (1.070) | 3 (0.020) | 3/290 | 25.5 | 1.7% | coding (1337/1422 nt) | clcA | chloride:H(+) antiporter ClcA |
| ? | U00096 | = 829741 | 150 (0.810) | coding (232/999 nt) | ybhG | HlyD_D23 family protein YbhG | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACTGGCGGCATCTATTCGCGCGCCGTTAACGGGGATCATTCTGGTTCTGGAGATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > U00096/176295‑176443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTGTTTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCAATGAAGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTATGACTATG < U00096/829741‑829594 TTACTGGCGGCATCTATTCGCGCGCCGTTAACGGGGATCATTCTGGTTCTGGAGATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTC < 1:106477/149‑1TTACTGGCGGCATCTATTCGCGCGCCGTTAACGGGGATCATTCTGGTTCTGGAGATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTC > 2:106570/1‑149 TTCTGGTTCTGGAGATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTG > 2:508421/1‑149 CTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTCAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTGTTTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCAATGAAGAAATC < 1:508421/149‑1 cctgaatTCAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTGTTTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCAATGAAGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTA < 2:2789316/142‑1 CAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTGTTTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCAATGAAGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTATGACTATG < 1:1803119/149‑1 TTACTGGCGGCATCTATTCGCGCGCCGTTAACGGGGATCATTCTGGTTCTGGAGATGACCGATAACTACCAGCTCATTTTGCCAATGATTATTACCGGTCTTGGCGCAACACTATTAGCGCAATTTACCGGCGGGAAACCGCTATACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > U00096/176295‑176443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAAGCCGTATGAGATTGCCCTGATGCAGGCGAAAGCGGGTGTTTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCAATGAAGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTATGACTATG < U00096/829741‑829594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |