Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | U00096 | 2,312,042 | 0 | G | C | 20.9% | 379.1 / 75.0 | 140 | G236G (GGC→GGG) ‡ | ompC | outer membrane porin C |
Reads supporting (aligned to +/- strand): ref base G (39/71); new base C (29/0); total (68/72) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.01e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 140 total aligned reads displayed.
TGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTA > U00096/2311896‑2312189 | tGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGc > 1:1433793/1‑148 (MQ=255) cAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTa < 1:1433742/149‑1 (MQ=255) aGCTTCGTAGTTCTGTGGGTTGTTCGCCCAACCCAGGGATGCTACGCGAGTTGGGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGa < 2:1433743/149‑1 (MQ=255) gCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGAt < 1:1433744/149‑1 (MQ=255) ttCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGt > 1:1433835/1‑149 (MQ=255) ttCGAAGTTATGTGCTTTGTTAGCACAACCCCGGGAACCTACTCTAGTTGCGTTGTAGGGCTGTGTGTACTTAGCAGCCAGGTAGATGTTGTTAGGGTCTTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCTCCGTTACCGATGt < 2:1433745/149‑1 (MQ=255) aGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAagca < 2:1433747/149‑1 (MQ=255) gTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAagcag < 2:1433748/149‑1 (MQ=255) gTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAagc > 1:1433809/1‑147 (MQ=255) cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCCGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGCTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 1:1433749/149‑1 (MQ=255) cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 2:1433750/149‑1 (MQ=255) tgCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGgtgt < 2:1433753/149‑1 (MQ=255) cTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg > 1:1433810/1‑144 (MQ=255) tttGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCATGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCt < 2:1433754/149‑1 (MQ=255) tttGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCt < 1:1433755/149‑1 (MQ=255) gTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAg > 1:1433776/1‑149 (MQ=255) tCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCa > 1:1433806/1‑149 (MQ=255) cGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTaa < 1:1433758/130‑1 (MQ=255) ccAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAg < 2:1433759/149‑1 (MQ=255) ccAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACg > 1:1433839/1‑148 (MQ=255) gggAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTg < 2:1433761/149‑1 (MQ=255) aaCCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAg < 1:1433762/149‑1 (MQ=255) aCCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGc < 2:1433764/149‑1 (MQ=255) aCCTACGCGAGTTGCGTTGGAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTAGTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGc < 1:1433763/149‑1 (MQ=255) cTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGGCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCt < 1:1433765/148‑1 (MQ=255) aCGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTgg < 1:1433767/148‑1 (MQ=255) gAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAACAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTgg > 2:1433808/1‑144 (MQ=255) gCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGcac > 1:1433834/1‑148 (MQ=255) gTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGc < 1:1433769/144‑1 (MQ=255) aGGTCTGGGTGTACTGAGCAGCCAGGTAGTTGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGGAGCGTTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATa < 2:1433772/149‑1 (MQ=255) cTGGGTGTTCTGAGCAGCCTGGTAGTTGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGa < 2:1433774/149‑1 (MQ=255) cTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGCTGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGa < 1:1433773/149‑1 (MQ=255) tACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTc < 1:1433775/149‑1 (MQ=255) tGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTa > 1:1433814/1‑149 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTAGCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAATCCTTCGTATTCATa < 2:1433779/149‑1 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATa < 2:1433778/149‑1 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATa < 2:1433780/149‑1 (MQ=255) ccAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATaa > 1:1433815/1‑149 (MQ=255) ccAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGAGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATaa > 1:1433894/1‑149 (MQ=255) ccAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATaa > 2:1433817/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGt > 1:1433818/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGGTTCAGCCCGGTCGCCGTTACGGATGTAAGCCGCGGTGTTCTGAGCAGCAGTCCGTTTGGAGCTGGAGATCGCCCCACCGATACCGAAACCTTCGTAATCATAAGt > 1:1433866/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGGTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCCTCAGTACGTTTGGAGCTGGAGATCGCCCCACCGCTCCCGAAACCTTCGTAATCATAAGt > 1:1433838/1‑149 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGcc < 1:1433787/58‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 1:1433783/78‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTgg < 1:1433782/108‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCg < 1:1433821/114‑1 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa < 2:1433785/149‑1 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa > 1:1433804/1‑149 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGga > 2:1433784/1‑108 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa > 2:1433854/1‑149 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa > 2:1433833/1‑149 (MQ=255) aGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGAt > 1:1433869/1‑148 (MQ=255) gATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAg < 2:1433788/149‑1 (MQ=255) aTGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGa < 2:1433789/149‑1 (MQ=255) tgttgtTAGCGTCGTATTTCCGACCACCAGTGTCGATATCAGAACTCTCCCAATAAAAAAAAAAAAAATCGATGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGaa > 2:1433847/1‑149 (MQ=255) gttgttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAc < 1:1433790/149‑1 (MQ=255) gttgttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAc > 2:1433841/1‑149 (MQ=255) ttgttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAACGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcc > 2:1433844/1‑149 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcc < 2:1433791/147‑1 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcc > 1:1433791/1‑147 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTg > 2:1433819/1‑97 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 2:1433863/1‑149 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGGTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 2:1433832/1‑149 (MQ=255) ttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGga < 1:1433820/98‑1 (MQ=255) ttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 1:1433873/1‑148 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGaa > 1:1433872/1‑143 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTAACGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTAGAGCTGGAGATCGCTCCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcctccg > 1:1433850/1‑149 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAACAAATAAAATCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGgag > 2:1433820/1‑98 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgccg > 2:1433843/1‑149 (MQ=255) gtcgtATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTAc < 1:1433794/80‑1 (MQ=255) gtcgtATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTgg < 1:1433825/86‑1 (MQ=255) tcgtATTTCAGACCACCAGTGTAGGTTTCAGCCCGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCCCCGATACCGAAACCTTCGGAATCATAAGTGATAGAAccgcc > 1:1433886/1‑143 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgcc > 2:1433823/1‑149 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACg > 2:1433794/1‑80 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgcc > 2:1433822/1‑149 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAATAGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgcc > 2:1433852/1‑149 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGa > 2:1433825/1‑86 (MQ=255) gtATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgt < 2:1433795/149‑1 (MQ=255) tATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgt < 1:1433797/148‑1 (MQ=255) aTTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCg < 1:1433827/93‑1 (MQ=255) aTTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAAt > 1:1433796/1‑120 (MQ=255) tttCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCt < 1:1433828/84‑1 (MQ=255) tttCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAATAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGc > 2:1433827/1‑93 (MQ=255) tttCAGACCACCAGCGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgtcgc < 1:1433798/149‑1 (MQ=255) ttCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgtcgcc > 2:1433826/1‑149 (MQ=255) gACCACCAGTGTAGGTTTCAGCACGGTCGCCGATACCGAAGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGttt > 1:1433889/1‑149 (MQ=255) caccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAGGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCCCCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGa > 1:1433917/1‑149 (MQ=255) ccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACg < 2:1433800/149‑1 (MQ=255) aGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGCAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCa > 1:1433865/1‑149 (MQ=255) gtAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGCGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTg > 2:1433880/1‑149 (MQ=255) tAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGc > 2:1433849/1‑149 (MQ=255) aGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCg < 1:1433801/149‑1 (MQ=255) tttCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCa < 1:1433802/149‑1 (MQ=255) ttCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCAc < 2:1433803/149‑1 (MQ=255) cAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTc < 1:1433805/91‑1 (MQ=255) cAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGa < 2:1433804/149‑1 (MQ=255) gCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGAcc > 1:1433901/1‑149 (MQ=255) ggTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGTAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCgttg < 2:1433807/149‑1 (MQ=255) cGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGCGCTGGAGATCGCACCACCGATTCCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgtta > 2:1433902/1‑149 (MQ=255) | TGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTA > U00096/2311896‑2312189 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |