Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | U00096 | 2,312,050 | 0 | C | A | 20.5% | 362.1 / 68.1 | 147 | G234C (GGT→TGT) | ompC | outer membrane porin C |
Reads supporting (aligned to +/- strand): ref base C (43/73); new base A (30/0); total (74/73) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.27e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 150 total aligned reads displayed.
AGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCA > U00096/2311904‑2312198 | gCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGAt < 1:1433744/149‑1 (MQ=255) ttCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGt > 1:1433835/1‑149 (MQ=255) ttCGAAGTTATGTGCTTTGTTAGCACAACCCCGGGAACCTACTCTAGTTGCGTTGTAGGGCTGTGTGTACTTAGCAGCCAGGTAGATGTTGTTAGGGTCTTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCTCCGTTACCGATGt < 2:1433745/149‑1 (MQ=255) gAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAag < 2:1433746/149‑1 (MQ=255) gTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAagcag < 2:1433748/149‑1 (MQ=255) gTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAagc > 1:1433809/1‑147 (MQ=255) tCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGCCCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCg > 1:1433795/1‑149 (MQ=255) cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCCGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGCTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 1:1433749/149‑1 (MQ=255) cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 2:1433750/149‑1 (MQ=255) cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg > 1:1433813/1‑149 (MQ=255) tgCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGgtgt < 2:1433753/149‑1 (MQ=255) cTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg > 1:1433810/1‑144 (MQ=255) cTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTc > 1:1433803/1‑149 (MQ=255) tttGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCATGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCt < 2:1433754/149‑1 (MQ=255) tttGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCt < 1:1433755/149‑1 (MQ=255) tGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTg > 1:1782817/1‑148 (MQ=255) gTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAg > 1:1433776/1‑149 (MQ=255) tCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCa > 1:1433806/1‑149 (MQ=255) cGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTaa < 1:1433758/130‑1 (MQ=255) cccAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCa > 2:1433816/1‑149 (MQ=255) ccAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAg < 2:1433759/149‑1 (MQ=255) ccAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACg > 1:1433839/1‑148 (MQ=255) gggAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTg < 2:1433761/149‑1 (MQ=255) aaCCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAg < 1:1433762/149‑1 (MQ=255) aCCTACGCGAGTTGCGTTGGAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTAGTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGc < 1:1433763/149‑1 (MQ=255) tACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGtt < 1:1433766/140‑1 (MQ=255) aCGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTgg < 1:1433767/148‑1 (MQ=255) gCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGcac > 1:1433834/1‑148 (MQ=255) tGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGca < 1:1433770/143‑1 (MQ=255) gTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGa < 2:1433771/149‑1 (MQ=255) aGGTCTGGGTGTACTGAGCAGCCAGGTAGTTGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGGAGCGTTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATa < 2:1433772/149‑1 (MQ=255) cTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGCTGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGa < 1:1433773/149‑1 (MQ=255) tGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTa > 1:1433814/1‑149 (MQ=255) cagcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCa < 2:1433776/149‑1 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCCCCGATACCGAAACCTTCGTAATCATa > 1:1433868/1‑149 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATa < 2:1433778/149‑1 (MQ=255) gcCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATa < 2:1433780/149‑1 (MQ=255) ccAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGAGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATaa > 1:1433894/1‑149 (MQ=255) ccAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATaa > 2:1433817/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCa < 1:1433781/90‑1 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGt > 1:1433818/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGGTTCAGCCCGGTCGCCGTTACGGATGTAAGCCGCGGTGTTCTGAGCAGCAGTCCGTTTGGAGCTGGAGATCGCCCCACCGATACCGAAACCTTCGTAATCATAAGt > 1:1433866/1‑149 (MQ=255) aGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGGTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCCTCAGTACGTTTGGAGCTGGAGATCGCCCCACCGCTCCCGAAACCTTCGTAATCATAAGt > 1:1433838/1‑149 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCgg < 1:1433783/78‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTgg < 1:1433784/108‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCg < 1:1433821/114‑1 (MQ=255) ggTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTg > 1:1433892/1‑149 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa < 2:1433785/149‑1 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAGTAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGga > 2:1433782/1‑108 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGc > 2:1433821/1‑114 (MQ=255) gTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGa > 2:1433833/1‑149 (MQ=255) tAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGAt < 2:1433786/149‑1 (MQ=255) gATGTTGTTCGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAACGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAg > 2:1433851/1‑149 (MQ=255) aTGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGa < 2:1433789/149‑1 (MQ=255) tgttgtTAGCGTCGTATTTCCGACCACCAGTGTCGATATCAGAACTCTCCCAATAAAAAAAAAAAAAATCGATGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGaa > 2:1433847/1‑149 (MQ=255) gttgttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAc > 2:1433841/1‑149 (MQ=255) gttgttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAc > 2:1433879/1‑149 (MQ=255) tgttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCt < 1:1433819/97‑1 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcc < 2:1433791/147‑1 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAcc > 1:1433791/1‑147 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 2:1433846/1‑149 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGGTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 2:1433832/1‑149 (MQ=255) ttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgc > 1:1433873/1‑148 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGaa > 1:1433872/1‑143 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgcc < 1:1433792/148‑1 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAACAAATAAAATCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGgag > 2:1433820/1‑98 (MQ=255) tAGCGTCGTATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAAccgccg > 2:1433843/1‑149 (MQ=255) tcgtATTTCAGACCACCAGTGTAGGTTTCAGCCCGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCCCCGATACCGAAACCTTCGGAATCATAAGTGATAGAAccgcc > 1:1433886/1‑143 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACg > 2:1433794/1‑80 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgcc > 2:1433822/1‑149 (MQ=255) tcgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAAAATAGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgcc > 2:1433852/1‑149 (MQ=255) cgtATTTCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAATAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACATTCTTAATCTTAAGTGATAGAACCGCCGAcgccg > 2:1433824/1‑149 (MQ=255) gtATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgt < 2:1433795/149‑1 (MQ=255) aTTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCg < 1:1433827/93‑1 (MQ=255) aTTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAAt > 1:1433796/1‑120 (MQ=255) tttCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTc < 1:1433799/61‑1 (MQ=255) tttCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCt < 1:1433828/84‑1 (MQ=255) tttCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAATAAAAAAAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGc > 2:1433827/1‑93 (MQ=255) tttCAGACCACCAGCGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgtcgc < 1:1433798/149‑1 (MQ=255) ttCAGACCACCAGTGTAGATATCAGAACTCTCCCAATAAAAAAAAAAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgtcgcc > 2:1433826/1‑149 (MQ=255) gACCACCAGTGTAGGTTTCAGCACGGTCGCCGATACCGAAGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGttt > 1:1433889/1‑149 (MQ=255) caccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGTTGTAAGCAGCGGTGTTCTGATCATCAGTACGTTTTGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGa < 1:1433824/149‑1 (MQ=255) caccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAGGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCCCCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGa > 1:1433917/1‑149 (MQ=255) ccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACg < 2:1433800/149‑1 (MQ=255) aGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGAcgccgtcgccgt > 1:1433859/1‑140 (MQ=255) gtAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGCGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTg > 2:1433880/1‑149 (MQ=255) tttCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCa < 1:1433802/149‑1 (MQ=255) ttCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCAc < 2:1433803/149‑1 (MQ=255) cAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTc < 1:1433805/91‑1 (MQ=255) cACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCg > 2:1433957/1‑149 (MQ=255) aCGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCgt < 2:1433806/149‑1 (MQ=255) ggTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGTAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCgttg < 2:1433807/149‑1 (MQ=255) cGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGCGCTGGAGATCGCACCACCGATTCCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgtta > 2:1433902/1‑149 (MQ=255) ccGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCTGTTTTGACGCAGTGCGTCACGACCGTTgttagt > 2:1433860/1‑149 (MQ=255) ccGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgttagt > 1:1433904/1‑149 (MQ=255) ccGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgttagt > 2:1433861/1‑149 (MQ=255) ccGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgttagt < 2:1433809/149‑1 (MQ=255) ccGTTACAGATGTAAGCAGCGGTGTTCTGAGCATCAGTACg > 1:1433858/1‑41 (MQ=255) cGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgttagtt < 2:1433810/149‑1 (MQ=255) tACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACg > 1:1880007/1‑149 (MQ=255) | AGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAGATCGCACCACCGATACCGAAACCTTCGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCA > U00096/2311904‑2312198 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |