Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*U000961,708,9010AC21.7% 133.6 / 14.0 87R661R (CGA→CGC) rsxCSoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base A (36/29);  new base C (13/5);  total (51/36)
Fisher's exact test for biased strand distribution p-value = 2.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAA  >  U00096/1708768‑1709048
                                                                                                                                     |                                                                                                                                                   
aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGGTTCGGCCGAGCCAGCGGCACAGGTCGAGCCGCGCAGGGCGGGCGGCGATGCCGGGATTGCCGGGGACAAAgcacgcggg                                                                                                                                      >  1:1427876/1‑146 (MQ=2)
       cAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCggggag                                                                                                                               >  2:1427883/1‑146 (MQ=11)
              gccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGATAGATCCGCGCAAAGCGGCCGTAGAAGCGGCTATTGCCCGCGCGCAAGCCCGCAAACGGGAGCAGCAGcc                                                                                                                        >  2:1427888/1‑149 (MQ=14)
                     aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATTCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCAGCAGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt                                                                                                                 >  2:1427825/1‑149 (MQ=255)
                     aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGATCGGCAGATCGAACAGAGCAAATAGACAGTCGAAGACGCTATTGCCCGAGACAAAAAAAACAAACTGGGACAGCAACCGGCTagt                                                                                                                 >  2:1427898/1‑147 (MQ=2)
                             aTTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCgcgc                                                                                                                                                   >  1:1427900/1‑107 (MQ=255)
                              ttGCCCGCGCCAAAGCCCGCAATCTTTAATATTTACAGGCTAACGCCGTTCCACAACAACATTTCGATCCTCGAATAGCTTCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa                                                                                                        <  2:1427821/149‑1 (MQ=9)
                                gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCgcgc                                                                                                                                                   >  1:1427921/1‑104 (MQ=255)
                                      gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                                                                                                               <  1:1427781/102‑1 (MQ=12)
                                         aaaGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAAGTACATAAGCGCGTAGACGACGTCGAAGCCGATATTGACCGAGCGAACGCTATCAATAAGAAACAGCAACCGGCTAATGCGGTGCCAGAAGGACAggg                                                                                             >  2:1427925/1‑148 (MQ=9)
                                           cgcccGCAACCCGGAACTTCAATACTCTAACGCCGACCCAGCACAACACCACTATCCGCGAACAGGCGCCGCTTACGACCTTATCGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTg                                                                                           <  2:1427838/145‑1 (MQ=255)
                                                   aGCTGGAACAGCAACAGGCTAATGCGGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa                                                                                                                                 <  1:1427793/103‑1 (MQ=255)
                                                   aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa                                                                                                                                 >  2:1427793/1‑103 (MQ=12)
                                                      tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcgc                                                                                                                                                   >  1:1427942/1‑82 (MQ=255)
                                                       ggAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCGGCTATTGCCCGCGCCCAGGCGCGAAAACCGGAACAGCAGCAGGCTAATGACGAGCCATAAGAGCAGGTAGCTCCGCGCAAAg                                                                               >  2:1427966/1‑149 (MQ=11)
                                                        gAACAGCAACAGGCTAATGCGGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc                                                                                                                               <  2:1427790/100‑1 (MQ=255)
                                                        gAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCCCAAGCGCGCAAACGCGCACAGCAGCCGGATAATGCGGAGCCAGAAGAACAGGTAGATCCGCGAAGAGc                                                                              >  2:1427943/1‑149 (MQ=14)
                                                            aGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                                                                                                                >  1:1427794/1‑111 (MQ=255)
                                                            aGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                                                                                                                <  2:1427794/111‑1 (MQ=255)
                                                            aGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgca                                                                                                                                            >  2:1427852/1‑82 (MQ=255)
                                                               aaCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGaa                                                                                                                                >  1:1427795/1‑92 (MQ=16)
                                                               aaCAGGATACTGCGTACCCAGACATACAGTACGATCCCCGCAAAGACGCTGTCGATTCCTCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTc                                                                       <  2:1427833/149‑1 (MQ=18)
                                                                aCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc                                                                                                                               <  2:1427795/92‑1 (MQ=16)
                                                                  aGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGACGCTATAGACCGAGCCAAAGCGCGCAAACTGGAACCGCAACCGGCGAATGCGGAGACAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCggc                                                                    >  2:1427853/1‑147 (MQ=14)
                                                                   ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGAAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGCTCCGCGCAAAGCGGCAGTAGacg                                                                   >  2:1427952/1‑147 (MQ=17)
                                                                     cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGCCCAGCACCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGACGTCGAAGCg                                                                 >  2:1427946/1‑149 (MQ=17)
                                                                       aaTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTAGCCGCGGc                                                               >  2:1427956/1‑149 (MQ=14)
                                                                           ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTAt                                                            >  1:1427892/1‑148 (MQ=255)
                                                                            ggaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                           <  2:1427803/80‑1 (MQ=255)
                                                                            ggaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                           >  1:1427803/5‑84 (MQ=255)
                                                                             gaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAg                                                                                                                             <  2:1427804/78‑1 (MQ=255)
                                                                             gaaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAg                                                                                                                             >  1:1427804/4‑81 (MQ=255)
                                                                               accAGAAGAACAGTTCGATCCGCTCAACGCCGCCGGCGAATCCTCTATTGATCGCGACAAAGCACGCAATCGGCAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAc                                                       <  2:1427801/148‑1 (MQ=11)
                                                                                ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg                                                                                                                       <  1:1427805/84‑1 (MQ=255)
                                                                                ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg                                                                                                                       >  2:1427805/1‑84 (MQ=255)
                                                                                  aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc                                                                                                                                           >  1:1427806/1‑62 (MQ=35)
                                                                                  aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc                                                                                                                                           <  2:1427806/62‑1 (MQ=35)
                                                                                   gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGCAGCGGCTATTGCACgcgc                                                   >  2:1427951/1‑149 (MQ=255)
                                                                                   gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGACCAGGTAGATCCGCGCAAAGCTGCAGTAGCCGCGGCTATTGCACgcgc                                                   >  2:1427928/1‑149 (MQ=14)
                                                                                    aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCAAAAGCGCGCAAACGGGACCAGCAACAGGCTAATGCGGAGCCAGAAGAAGAGGTAGCTCAGCGCAACGCGGCAGTCGCCGCGGCTATTGCCCgcgca                                                  >  2:1427993/1‑148 (MQ=11)
                                                                                        acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGCCCgcgcgcagg                                              >  1:1427905/1‑144 (MQ=255)
                                                                                        acaGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGTGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGCAGCGGCTATTGCACgcgcgcagg                                              >  2:1427972/1‑144 (MQ=14)
                                                                                           ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAgcg                                                                                                                                            >  1:1427891/1‑52 (MQ=255)
                                                                                             tCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCGAAAGCGCGCAAGCGGGACCAGCAACAGGCTAAAGCGGAGACAGAAGAACAGGATGATACGCGCAAAGCTGCCGTCGCCGCGGCTCGTGCACGAGCGAAAGCaaac                                         >  2:1427979/1‑146 (MQ=14)
                                                                                               cacccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCTCGCAATCGGGAACAGCAACCGTCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCTAAGCACGCaa                                       <  2:1427809/146‑1 (MQ=17)
                                                                                                aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAc                                                                                                 >  2:1427807/1‑90 (MQ=255)
                                                                                                aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGc                                                                                                               <  2:1427808/76‑1 (MQ=255)
                                                                                                aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAc                                                                                                 <  1:1427807/90‑1 (MQ=255)
                                                                                                aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCACAGCTGc                                                                           >  1:1427903/1‑112 (MQ=255)
                                                                                                 tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                   >  1:1427881/1‑135 (MQ=255)
                                                                                                   cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCACGCGCAAAAGCACGCaaaggg                                   >  2:1427897/1‑145 (MQ=11)
                                                                                                    gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGACGCGGCTATTGCACGCGCAAAGGCCCGCAAggggg                                  >  1:1427955/1‑145 (MQ=17)
                                                                                                            ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa                          <  2:2887145/149‑1 (MQ=255)
                                                                                                              gccgccGAAGCCGCTATTGCCCTATCCAAAGCGCGCAAACGGTAACCGCAACCGTCTACTTCGCAGCCTGTCTACCCTGCTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                        <  2:1427876/149‑1 (MQ=17)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa                                                                                                                                       <  1:1427818/38‑1 (MQ=40)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa                                                                                                                              <  1:1427816/47‑1 (MQ=255)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGCACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAACGCACGCAAGCTGGAACAGCAACa                        >  1:1427985/1‑149 (MQ=255)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                        >  2:1427938/1‑149 (MQ=255)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGACGCGGCTATTGc                                                         >  1:1427890/1‑116 (MQ=255)
                                                                                                              gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTAGAAGCGGCTATTGCCCGCGCGAAAGCCAGCAAGGTCGACCAgcagca                        >  2:1427920/1‑149 (MQ=17)
                                                                                                              gccgTCGAAGCCGCTATTGCCAGAGCCAAAGCGCGCAAACGGGAACAGCACCCGGCGAATGCGGAGCCAGAAGCACAGGTTGCTCCGCGCAAAGCTGCCCGCGCAGCGGCTATTGCCCTCGCCAAAGCCCGCAACCAGGAACAGCaaac                        >  2:1427964/1‑147 (MQ=17)
                                                                                                              gccgTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc                                                                                     <  1:1427819/88‑1 (MQ=255)
                                                                                                                cctCGAAGCCGCTACCGCCCGAGCCAACGCGCGCATTCTTTAACTTCAAGCGGCTAATGCTGATCTAGAATATCAGGTTTATCGTCGCTATTCCGATGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg                      <  2:1427893/147‑1 (MQ=2)
                                                                                                                 gTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGTGCCAGAAGAACAGGTTGCTCCGCGCGAGGCTGCGGTCGCGGCGGCTAGTGCACCCGGCAGGGCGCGCTAGCAGGAACAGCAACAGGc                     >  2:1427886/1‑149 (MQ=17)
                                                                                                                 gTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTAGCAGCGGCTATTGCACGCGCACAAGCCCGCAAGCAGGACCAGCAACAGGc                     >  2:1427929/1‑149 (MQ=17)
                                                                                                                  ttgAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg                                                                                               <  1:1427824/72‑1 (MQ=11)
                                                                                                                  tCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa                                                                                                                                 <  1:1427822/40‑1 (MQ=255)
                                                                                                                  gcGAAGCCGCTACTGCCCGAGCCAAAGCTCGCAAACTGGAACAGCAACCCGCTACAGCGGAGCCAGAAGAACAGCCAGCTCCGCGCACAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                    <  2:1427823/148‑1 (MQ=14)
                                                                                                                    gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                           >  1:1427924/1‑44 (MQ=255)
                                                                                                                    gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGAAGCGGCTATTg                                                          >  1:1427917/1‑109 (MQ=255)
                                                                                                                     aaGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCTCAAAGCTGCCTTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                  <  1:1427825/148‑1 (MQ=255)
                                                                                                                      aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg                                                                                                                <  2:1427826/53‑1 (MQ=255)
                                                                                                                       gCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCAAAGGCACGCAAGCAGGCAGAGCAGCAGACTAAGGc               >  2:1427901/1‑149 (MQ=21)
                                                                                                                       gCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                  <  1:1427828/146‑1 (MQ=255)
                                                                                                                        ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCg              >  2:1427902/1‑149 (MQ=255)
                                                                                                                         agCTATTGCCCGAGCCAAAGCGCGCAAACGGGaa                                                                                                                                <  2:1427829/33‑1 (MQ=255)
                                                                                                                          gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCGGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGcc                                                  <  1:1427830/111‑1 (MQ=255)
                                                                                                                          gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCCGCGGCTATTGCACGCGCCCAGGCCCGCAAGCACGACCAGCAACAGGCTAATGAGGt            >  2:1427899/1‑149 (MQ=18)
                                                                                                                          gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGACCAGCAACAGGCTAATGCGGt            >  1:1427996/1‑149 (MQ=255)
                                                                                                                           cTATTGCCCGTGCCAAAGCGCGCAAACGGGAACAGCAACCGGc                                                                                                                     <  1:1427831/43‑1 (MQ=255)
                                                                                                                           cTATTGCCCGTGCCAAAGCGCGCAAACGGGAACAGCAACCGGc                                                                                                                     >  2:1427831/1‑43 (MQ=255)
                                                                                                                            tATCGCCCGCGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACa                                                                                                <  1:1427834/63‑1 (MQ=14)
                                                                                                                               tGCCCGTGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa                                            <  1:1427835/112‑1 (MQ=255)
                                                                                                                                gCCCGCGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGt                                                                                             <  1:1427837/62‑1 (MQ=255)
                                                                                                                                gCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTAtt                                                           <  1:1427836/96‑1 (MQ=255)
                                                                                                                                 cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa                                 <  1:1427839/121‑1 (MQ=255)
                                                                                                                                  ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCGAAAGAACGCAAGCTGGACCAGCAGCAGGCTAATGCGGTAGCagaag    >  2:1427915/1‑149 (MQ=37)
                                                                                                                                  ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag    >  2:1427916/1‑149 (MQ=255)
                                                                                                                                   cGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                   >  1:1427912/1‑101 (MQ=255)
                                                                                                                                    gAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCACGAACAGCAACAGGCTAATGCGGTACCAgaagaa  >  2:1427973/1‑149 (MQ=255)
                                                                                                                                     |                                                                                                                                                   
ATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAA  >  U00096/1708768‑1709048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑