mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 43.3% | 73.1 / 163.9 | 122 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 2,947,591 | 0 | A | . | 27.3% | 57.3 / 18.1 | 22 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,286,885 | 0 | T | C | 25.6% | 72.0 / 19.4 | 43 | S59S (AGT→AGC) | ychS | putative uncharacterized protein YchS |
| * | U00096 | 2,947,465 | 0 | T | . | 22.2% | 73.6 / 17.2 | 27 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,063,283 | 0 | G | T | 20.4% | 245.3 / 24.6 | 93 | P165T (CCG→ACG) | cbpA | curved DNA‑binding protein |
| * | U00096 | 1,287,009 | 0 | A | T | 20.0% | 88.1 / 15.7 | 46 | intergenic (+25/+57) | ychS/rttR | putative uncharacterized protein YchS/small RNA RttR |
| * | U00096 | 2,947,467 | 0 | A | C | 20.0% | 58.9 / 11.6 | 25 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 4,338,130 | 0 | G | C | 20.0% | 351.0 / 36.5 | 150 | intergenic (‑201/+124) | adiY/adiA | DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 1287084 | 46 (0.360) | 25 (0.230) | 15/252 | 8.9 | 29.6% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 79 (0.710) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 1287262 | 81 (0.630) | 7 (0.060) | 5/250 | 13.5 | 10.1% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 56 (0.510) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | 2817670 = | 140 (1.090) | 5 (0.040) | 4/292 | 15.4 | 5.2% | intergenic (‑167/+114) | yqaB/argQ | fructose‑1‑phosphate phosphatase YqaB/tRNA‑Arg |
| ? | U00096 | = 2818216 | 44 (0.340) | noncoding (59/77 nt) | argY | tRNA‑Arg | |||||
| * | ? | U00096 | = 2615115 | 108 (0.840) | 4 (0.030) | 3/292 | 16.1 | 2.7% | coding (767/1062 nt) | yfgO | putative transporter YfgO |
| ? | U00096 | 3808464 = | 179 (1.390) | intergenic (‑226/‑76) | rirA/waaA | small regulatory RNA RirA/KDO transferase | |||||
| * | ? | U00096 | 583386 = | 205 (1.590) | 3 (0.020) | 3/290 | 16.1 | 1.9% | intergenic (+326/‑295) | tfaX/appY | protein TfaX/DNA‑binding transcriptional activator AppY |
| ? | U00096 | = 2802089 | 111 (0.870) | coding (742/2145 nt) | nrdE | ribonucleoside‑diphosphate reductase 2 subunit alpha | |||||