New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 = 781446140 (0.660)58 (0.320) 14/252 18.9 30.8% intergenic (+2/‑131) lysZ/lysQ tRNA‑Lys/tRNA‑Lys
?U00096 2521487 = 140 (0.770)intergenic (+159/+106) lysV/xapR tRNA‑Lys/DNA‑binding transcriptional activator XapR
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 143 total aligned reads displayed.

CATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTT  >  U00096/781302‑781593
                                                                                                                                                |                                                                                                                                                   
cATCCTGCACGACCCACCACTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGATTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTATATTCATTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaa                                                                                                                                                 <  2:543582/149‑1 (MQ=25)
     tGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtg                                                                                                                                            >  1:543652/1‑149 (MQ=255)
     tGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtg                                                                                                                                            >  2:543660/1‑149 (MQ=255)
               accaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTa                                                                                                                                  <  1:543587/149‑1 (MQ=255)
               accaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTATTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTa                                                                                                                                  >  1:543687/1‑149 (MQ=255)
                ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGGCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAg                                                                                                                                               <  1:2694023/135‑1 (MQ=255)
                 caATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTaaa                                                                                                                                                >  1:543758/1‑133 (MQ=255)
                  aaTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTag                                                                                                                                 >  1:543665/1‑147 (MQ=255)
                    tCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGaa                                                                                                                             >  1:543680/1‑149 (MQ=255)
                     cTTAAAGATTGTCCCCGAGTAAAAATCTTTCAGGTAACACCAGTATGTGTCGTTAGCTCAGTTTGTAGAGCAGTTTACTTTTAATCAATTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAAc                                                                                                                            <  2:543588/149‑1 (MQ=25)
                     cTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTAT‑TGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGTGCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACg                                                                                                                           <  1:543589/149‑1 (MQ=255)
                       tAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTATCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGTTCGCAGGGTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGt                                                                                                                          <  2:543590/149‑1 (MQ=255)
                       tAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGt                                                                                                                          >  1:543678/1‑149 (MQ=255)
                       tAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGt                                                                                                                          <  2:543592/149‑1 (MQ=255)
                         aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGa                                                                                                                        <  2:1992409/149‑1 (MQ=255)
                         aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGa                                                                                                                        <  1:543594/149‑1 (MQ=255)
                         aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGa                                                                                                                        <  1:543593/149‑1 (MQ=255)
                              tGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGAt                                                                                                                   >  2:2749355/1‑149 (MQ=255)
                                 ccccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGGTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAAc                                                                                                                <  2:543597/149‑1 (MQ=255)
                                  cccGAGTAAAAATCTTTCAGGTAACACCCGTATTGGTCGTTAGCTCAGTTGGTAGAGCAGGTGACTTTTAATAAATTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACg                                                                                                               <  2:543598/149‑1 (MQ=255)
                                    cGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGtt                                                                                                             <  1:543601/149‑1 (MQ=255)
                                    cGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGtt                                                                                                             >  2:543671/1‑149 (MQ=255)
                                     gAGTAAAAATCTTTCAGGTAACACCCTTATTGTTCGTTAGCTCAGTTGGTAGAGCATTTTACTTTTATTAAATTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTg                                                                                                            <  1:543604/149‑1 (MQ=25)
                                        tAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGa                                                                                                                        <  1:543605/134‑1 (MQ=255)
                                         aaaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGtt                                                                                                        >  2:1290209/1‑149 (MQ=255)
                                         aaaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGtt                                                                                                        >  1:619900/1‑149 (MQ=255)
                                             aTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCa                                                                                                    >  2:543676/1‑149 (MQ=255)
                                               cTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAAc                                                                                                  <  2:543610/149‑1 (MQ=255)
                                                    aggcttcacCCTGATGGGTCGATAGGTCAGTTCTTAGAGCAGTTGTTGTTAAATCCTTTGGTCGCTGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGccc                                                                                             <  2:543661/143‑1 (MQ=18)
                                                     ggTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGCTGACTGGTAGAGAACGTGAAGGATAACCTTGCGTGCTCAACGGcac                                                                                             >  1:543753/1‑146 (MQ=21)
                                                        aaCACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAg                                                                                         <  2:543613/149‑1 (MQ=255)
                                                               gtctGGGTCGTTAGCTCATTTGGTAGAGCAGTTGACTTTAAATCAATTGGTCGCAGGTTCTACTCCTGCACGACCCACCAATTTAAAGGTTTTTACTGTTATATACCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgaga                                                                                  <  2:543617/146‑1 (MQ=17)
                                                               gTATGGGTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCTATTGGTCGAAGGTTCGAATCCTGCACGACCCACCAATTTAAATGTTGTTACTGGTAGATATCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgaga                                                                                  <  2:543616/149‑1 (MQ=18)
                                                                 aTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACg                                                                                >  1:3123622/1‑149 (MQ=255)
                                                                  tGGGTCGTTAGCTCAGTTGGTAGAGCATTTTACTTTTATTCACTTGGTCGAAGGTTCTAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGACCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGa                                                                               <  2:543619/149‑1 (MQ=18)
                                                                   gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGtt                                                                                                             <  1:543622/118‑1 (MQ=255)
                                                                   gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACCTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATaa                                                                                                                 <  1:543631/114‑1 (MQ=255)
                                                                     gTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaa                                                                                                                                                 <  1:543635/80‑1 (MQ=34)
                                                                     gTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATaa                                                                                                                 <  1:543636/112‑1 (MQ=255)
                                                                       cGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaa                                                                                                                                                 <  1:543638/78‑1 (MQ=34)
                                                                       cGTTAGCTCAGACGGCAGCGCAGTAGACCTTTAATCAATCGGTCGCAGCCTCGAATCCTGCACGACCCACCAATTTAAACGTGGTCACTGGTAGATACCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCg                                                                          <  2:543639/149‑1 (MQ=18)
                                                                         ttAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGt                                                                                                         <  1:543641/116‑1 (MQ=255)
                                                                          tAGCTCAGTTGGTAGAGCAGTTGACTTTAAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGa                                                                         <  1:543643/147‑1 (MQ=255)
                                                                              tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATc                                                                   >  2:543677/1‑149 (MQ=255)
                                                                                agtttttAGAGCAGTTGACTTTTAATCAATTGGGCGCAGTTTCGAATCCTGCACGTCCCACGAATTTACATTTTTTTACTGGTAGAGACCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCt                                                                 <  2:543649/143‑1 (MQ=18)
                                                                                 gTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCACCGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTg                                                                >  2:543690/1‑149 (MQ=255)
                                                                                  ttGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGc                                                               <  2:543650/149‑1 (MQ=255)
                                                                                   tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCa                                                              <  1:1859981/149‑1 (MQ=255)
                                                                                      tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGa                                                           <  2:543652/149‑1 (MQ=255)
                                                                                           tattttaCTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACTAACGACCATTTTAATTGTGGTTTCTGTTATTGATCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACccac                                                      <  2:543656/143‑1 (MQ=17)
                                                                                             gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgaga                                                                                  <  2:543653/119‑1 (MQ=255)
                                                                                             gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgaga                                                                                  >  1:543653/1‑119 (MQ=255)
                                                                                              ttGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGtt                                                                                                        <  2:543627/96‑1 (MQ=255)
                                                                                                 aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTa                                                                                                       <  2:543628/94‑1 (MQ=255)
                                                                                                  cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTg                                               >  1:543693/1‑149 (MQ=255)
                                                                                                   ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgag                                                                                   <  2:543658/112‑1 (MQ=255)
                                                                                                   ttttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgag                                                                                   >  1:543658/1‑112 (MQ=255)
                                                                                                     ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaaa                                                                                                                                                >  1:543808/1‑49 (MQ=38)
                                                                                                     ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAAt                                            >  2:543708/1‑149 (MQ=255)
                                                                                                        aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGa                                                                                                                        <  1:543659/70‑1 (MQ=255)
                                                                                                            aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTGAg                                     >  1:543692/1‑149 (MQ=255)
                                                                                                             ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTagag                                                                                                                               <  1:543662/58‑1 (MQ=255)
                                                                                                              tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTg                                                                                                            <  2:543637/76‑1 (MQ=255)
                                                                                                                  ctcAGGTTCTCTTCATGCAAGACGCACCAATTTAATGGTTGTAACTGGTATATAACGTGTAGGATAACGTTGCGTTAGCAACGGCCCGAAGTGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGgcagca                               <  1:543683/147‑1 (MQ=18)
                                                                                                                   gCAGGTTCGAATCCTGCACGACCCACCAATTTaaa                                                                                                                                                >  1:543817/1‑35 (MQ=40)
                                                                                                                   gCAGGTTCGAATCCTGCACGACCCACCAATTTaaa                                                                                                                                                >  1:543816/1‑35 (MQ=40)
                                                                                                                    cAGGTTCGAATCCTGCACGACCCACCAATTTaaaa                                                                                                                                               >  2:543820/1‑34 (MQ=37)
                                                                                                                    cAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATa                             <  2:543665/149‑1 (MQ=255)
                                                                                                                     agcctCGAATCTTGCACGACCAACCAATTTAAATTTTCTTACTGCTATATAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATaa                            <  2:543667/145‑1 (MQ=21)
                                                                                                                     aGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAAGGATTGAGggagcggaa                            >  2:543829/1‑145 (MQ=255)
                                                                                                                         tCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATcc                         >  1:543760/1‑148 (MQ=255)
                                                                                                                           gAATCCTGCACGACCCACCAATTTAAAGGAGCGACCTGGTAGAGAACGTGAAGGATAACGTTGCGGAAGCGACGGCCCGCGGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCCAGGTGAATGATTAAGGCCGCGGAGTCCCGc                      >  2:543828/1‑149 (MQ=18)
                                                                                                                            aaTCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATaa                                                                                                                 <  1:543669/57‑1 (MQ=255)
                                                                                                                             aTCCTGCACGACCCACCATTTTAACGGTGGTTACTGGTAGTTAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCaa                    <  2:543673/149‑1 (MQ=255)
                                                                                                                             aTCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGccc                                                                                             <  1:543672/76‑1 (MQ=255)
                                                                                                                             aTCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCaa                    <  1:543671/149‑1 (MQ=255)
                                                                                                                              tCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATccc                        <  1:543675/144‑1 (MQ=255)
                                                                                                                               ccTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAgg                  >  1:543791/1‑149 (MQ=255)
                                                                                                                                cTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAggg                 <  1:543676/149‑1 (MQ=255)
                                                                                                                                  gCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGaa                                                                                                                             <  2:543663/39‑1 (MQ=255)
                                                                                                                                  gCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCa                                                              <  1:543679/102‑1 (MQ=255)
                                                                                                                                  gCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGt               <  2:543678/149‑1 (MQ=255)
                                                                                                                                     cGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGt            >  1:543737/1‑149 (MQ=255)
                                                                                                                                      gACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGtt           >  1:543751/1‑149 (MQ=255)
                                                                                                                                      gACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGtt           >  2:543734/1‑149 (MQ=255)
                                                                                                                                      gACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGtt           <  2:543681/149‑1 (MQ=255)
                                                                                                                                      gACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGtt           <  2:543680/149‑1 (MQ=255)
                                                                                                                                       tcccACGATTTTAAATGTTGTTACTGTTAGATAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTa          <  2:543691/148‑1 (MQ=25)
                                                                                                                                       aCCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGt                                                                       >  1:543920/1‑88 (MQ=255)
                                                                                                                                        cccACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAg         >  1:543803/1‑149 (MQ=255)
                                                                                                                                         ccaccaATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGACGTTAGc        <  2:3432357/149‑1 (MQ=255)
                                                                                                                                          caccaATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGc                                                                                                     <  2:543647/55‑1 (MQ=255)
                                                                                                                                          caccaATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCt       >  1:543781/1‑149 (MQ=255)
                                                                                                                                           accaATTTAAATGTTGTTACTGTTAGTTAACGTGATGGATAACGTTGCGTTAGCTACGGGCCGAAGGGCGAGACGTAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTc      <  2:543684/149‑1 (MQ=25)
                                                                                                                                           accaATTTAAATGTTGTTACTGTTAGTTAACGTGAATGATAACGTTGCGTTAGCAACTGGCCGAAGGGCGAGACGAATTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTc      <  2:543685/149‑1 (MQ=25)
                                                                                                                                              aaTTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAg    >  1:543735/1‑148 (MQ=255)
                                                                                                                                              aaTTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGt   >  2:543738/1‑149 (MQ=255)
                                                                                                                                               aTTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGtt  >  2:543818/1‑149 (MQ=255)
                                                                                                                                               aTTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGt   >  1:543731/1‑148 (MQ=255)
                                                                                                                                               aTTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCAGCAAGGGGTCGTTAGCTCAGtt  >  1:543778/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
CATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTT  >  U00096/781302‑781593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.