Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*U000961,708,9010AC24.7% 151.2 / 12.3 88R661R (CGA→CGC) rsxCSoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base A (41/23);  new base C (18/3);  total (59/29)
Fisher's exact test for biased strand distribution p-value = 9.98e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAA  >  U00096/1708755‑1709048
                                                                                                                                                  |                                                                                                                                                    
gaagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCGAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCAGAGc                                                                                                                                                    >  2:1197369/1‑149 (MQ=255)
    aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                                                                                                                >  2:1197317/1‑149 (MQ=17)
               ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGACACAGGCTACTCCAGAGGGAGAACAACAGGTCGATCCGCGCACGGCCGCAGTCGAAGCCGCTATTGCCCGCGCCAACGCGCGCaggcg                                                                                                                                     >  2:1197283/1‑145 (MQ=11)
               ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCAAACGCGCGAAACCg                                                                                                                                     >  2:1197427/1‑149 (MQ=14)
                  cgcAAAGCCGCCGGCGAAGCCGCTATAGCCCGTGCCACAGCACGCAAGCTGGCACATCAACAGGCTACTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa                                                                                                                                  <  1:1197283/149‑1 (MQ=17)
                   gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCAGCACTCAAAACCGAAATTGACCGAGACAAAGAACGGAACCgggga                                                                                                                                 >  2:1197384/1‑147 (MQ=11)
                          cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTAGATCCGAGCACAGCAGACGTAGAAGACGCTAAAGCCAGAGCCAAACCGAGCAAGCCGGAACAGaaaa                                                                                                                          >  2:1197391/1‑148 (MQ=11)
                                  aaGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCAAAAGCCAGCAAACGGGACCAGCAGCAGGCTaaa                                                                                                                  >  2:1197409/1‑148 (MQ=14)
                                      cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGCACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTGGCCGCCGCTATTGCCCGCGCACAGGCCCGAAAACCGGCACAGCACCCGGCtgtagagg                                                                                                              >  2:1197417/1‑142 (MQ=14)
                                      cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACCGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGc                                                                                                                >  1:1197303/1‑147 (MQ=255)
                                         tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGCGCGAACGCGACAAAAGCGGAACAGCAGAAGGATAATGGGGAGc                                                                                                           >  1:1197394/1‑149 (MQ=14)
                                          aTTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGCCGCGGCTATTGCCCGCGCACAGGCCCACAAACCCGACCAGCACAAGGATAATGAGGAGcc                                                                                                          >  2:1197421/1‑149 (MQ=11)
                                             gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTCGCCGCGGCTATTGCCCGCGCGAAGGCCCGAAAAGGCGCACAGCAGCAGGCTGATGAGGAGCCagg                                                                                                       >  2:1197415/1‑148 (MQ=14)
                                               ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTACTGCCGAGCCAGAACAACAGGTCGTTCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag                                                                                                     <  1:1197308/149‑1 (MQ=255)
                                                           aCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCCAAAGCCCGAAAACGGGAACAGCAGCAGGCTATTGCGGAGCCAGAAGAACAGGTGGATc                                                                                         >  2:1197426/1‑149 (MQ=14)
                                                                       aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCAAAAGCCCGCAAACCCGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACACTTTGATCCGCGCAA‑AGcag                                                                            >  2:1197454/1‑147 (MQ=14)
                                                                          gCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAGGCGCGCAAACGGGAACAGCAACCGGATGATGCGGAGCCATAAGAACAGGTTGAACCGCGCAC‑AGCGGCCg                                                                         >  1:1197453/1‑149 (MQ=17)
                                                                            aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCGAGCAAACGCGCACAGCAACCGGCTAATGCCGAGCCAGAAGAACAGCGTGATCCGCGCAA‑AGCTGCAGta                                                                       >  2:1197447/1‑148 (MQ=17)
                                                                              cAGTCTAATCCCTACCCAGAACACGAGGCCGATCCGCGCAAACCCGCCGTAGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAATCTGGAACAGCAACCGGCTAATGCGGAGCCAGAACAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGa                                                                     <  2:1197328/149‑1 (MQ=17)
                                                                                ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAT‑CGCGGAAGAGCTGCCGGCGagg                                                                   >  2:1197362/1‑147 (MQ=17)
                                                                                ggCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCAAAAGCCACAAAACGCGAACAGCAACCGGATAATAAGGTACCAGAAGAAGAGGGTGATCCTAGCAA‑ATCTGCCGTGGacg                                                                   >  2:1197466/1‑147 (MQ=9)
                                                                                      tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGCACAGCAACCGGCTAATGCGGAGCCAGACGAACAGGTTGATCCGCGCAA‑AGCTGCCGTAGAAGCGGCTa                                                             >  1:1197390/1‑149 (MQ=255)
                                                                                      tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCt                                                              >  1:1197370/1‑148 (MQ=255)
                                                                                        ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa                                                                                                         <  1:1197317/104‑1 (MQ=255)
                                                                                         cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc                                                                                                                                              >  1:1197444/1‑66 (MQ=255)
                                                                                         cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCTCGCAAACGGGAACAGAAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTAGAAGCGGCTATTg                                                          >  1:1197372/1‑149 (MQ=14)
                                                                                         cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATc                                                                                         >  1:1197367/1‑119 (MQ=255)
                                                                                          gAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACGGGAACAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTAGAAGCGGCTATTGc                                                         >  2:1197378/1‑149 (MQ=14)
                                                                                          gAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGc                                                         >  1:1197401/1‑149 (MQ=255)
                                                                                            gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAGGCGCGCAAACGGGAACAGCACCCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTAGAAGCGGCTATTGccc                                                       >  2:1197385/1‑147 (MQ=14)
                                                                                            gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCGGCAGTAGAAGCGGCTATTGccc                                                       >  2:1197379/1‑147 (MQ=255)
                                                                                            gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTGGACGCGGCTATTGCAc                                                       >  2:1197458/1‑149 (MQ=14)
                                                                                               aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg                                                                                                                                                     <  2:1197319/53‑1 (MQ=33)
                                                                                               aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg                                                                                                                                                     >  1:1197319/1‑53 (MQ=33)
                                                                                                gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg                                                                                                                                                     >  2:1197321/1‑52 (MQ=33)
                                                                                                gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg                                                                                                                                                     <  1:1197321/52‑1 (MQ=33)
                                                                                                gAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa                                                                                                                                         <  2:1197316/64‑1 (MQ=35)
                                                                                                  acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCgg                                                                                                              >  1:1197323/1‑89 (MQ=255)
                                                                                                  acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCgg                                                                                                              <  2:1197323/89‑1 (MQ=255)
                                                                                                   caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                            <  1:1197322/74‑1 (MQ=255)
                                                                                                   caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                            >  2:1197322/1‑74 (MQ=255)
                                                                                                     acaGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCCAAGCGCGCAAACGGGAACAGCACCCGGCTAATGCGGAGCCCGAAGAACAGGTGGATCCGCGCAA‑AGCTGCCGTCGCCGCGGCTATTGCCCgcgcacatg                                              >  1:1197430/1‑144 (MQ=14)
                                                                                                      caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc                                             >  1:1197398/1‑149 (MQ=255)
                                                                                                        ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                                                                                                                <  1:3090860/49‑1 (MQ=38)
                                                                                                        ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                                                                                                                >  2:1197327/1‑49 (MQ=38)
                                                                                                        ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa                                                                                                                                                <  1:1197327/49‑1 (MQ=38)
                                                                                                        ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCTGAGGCAGAAGAACAGGTTGTTCAGCGCAG‑AGCTGACGTCGAAGCGGCTATTGCACGCGCCAAAGCAc                                           >  1:1197326/1‑149 (MQ=17)
                                                                                                            gATCCTCGCAAACCTGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa                                                                                                      <  1:1197329/87‑1 (MQ=14)
                                                                                                             aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGATCAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg                                      >  1:1197418/1‑149 (MQ=255)
                                                                                                              tCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTGGATCCGCGCAA‑AGCTGCCGTAGACGCGGCTATTGCCCGCGCGAAGGCCCGCAAg                                      >  1:1197474/1‑148 (MQ=14)
                                                                                                               ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTAGAAGCGGCTATTGCACGCGCAAAAGCAAGAAAGca                                    >  2:1197405/1‑148 (MQ=17)
                                                                                                                cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc                                                                                                                             <  2:1197315/60‑1 (MQ=255)
                                                                                                                   gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa                                                                                                                                        >  1:1197330/1‑46 (MQ=38)
                                                                                                                    cAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg                                                                                                                                               >  1:1197438/1‑38 (MQ=40)
                                                                                                                    cAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGaa                                                                                                                                 <  1:1197331/52‑1 (MQ=255)
                                                                                                                     accgcccccGCCGAAGCCGCTATTGCCCGCGCCAAAGCTCGCAATCTCGCACAGCAACACGCTACTGCGGAGCCAGAAGAACATCCAGCTCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa                              <  2:1197342/146‑1 (MQ=11)
                                                                                                                     aaaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAc                                                                                                                                      <  2:1197330/46‑1 (MQ=255)
                                                                                                                      aaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                            <  1:1197333/55‑1 (MQ=255)
                                                                                                                      aaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAg                             >  1:1197387/1‑149 (MQ=255)
                                                                                                                        gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt                                                                                                                     <  1:1197334/60‑1 (MQ=255)
                                                                                                                        gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt                                                                                                                     >  2:1197334/1‑60 (MQ=255)
                                                                                                                        gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                   >  1:1197389/1‑125 (MQ=255)
                                                                                                                        gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTAGAAGCGGCTATTGCACGCGCACACGCAAACAAGCACGACCAGCa                           >  1:1197410/1‑149 (MQ=17)
                                                                                                                           gccgTCGAAGCCGCTATTGCCCTTGCCAAATCGCGCACGCGTGAACCGCTACCTCCTAATTCGGAGCCATATCACCTCTTCGTTCCTCGCAA‑AGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                        <  2:1197383/149‑1 (MQ=2)
                                                                                                                           gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                   >  1:1197403/1‑122 (MQ=255)
                                                                                                                           gccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaaaa                        >  1:2186257/1‑147 (MQ=255)
                                                                                                                           gccgTCGAAGCCGCTATTGCCAGAGCCACAGCTCGCATACGTTAACAGAATCCGGCCACGCCGCTGCTAGTATATCAGGTAGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa                        <  2:1197375/149‑1 (MQ=17)
                                                                                                                            ccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGCCGCGGCTATTGCACGCGCCAACGCACGCAAGCTGGACcagcagcag                       >  1:1197483/1‑149 (MQ=17)
                                                                                                                             cttCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAgg                                                                                               <  1:1197338/75‑1 (MQ=255)
                                                                                                                             cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGc                                                                           <  2:1197337/96‑1 (MQ=255)
                                                                                                                             cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAGCAgg                      >  2:1197432/1‑149 (MQ=255)
                                                                                                                                 gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa                                                                                                                   >  2:1197340/1‑53 (MQ=255)
                                                                                                                                 gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTaa                                                                                                                   <  1:1197340/53‑1 (MQ=255)
                                                                                                                                 gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACgcgc                                                   >  1:1197469/1‑116 (MQ=255)
                                                                                                                                   aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc                                                                                                                             <  1:1197344/41‑1 (MQ=255)
                                                                                                                                   aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGc                                                                           >  1:1197400/1‑90 (MQ=255)
                                                                                                                                   aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTAGAAGCGGCTATTGCACGCGCAAAGGCACGCAAGCACGAACAGCAGCAGGATAATg                >  2:1197424/1‑149 (MQ=21)
                                                                                                                                   aGCCGCTATCGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGtt                                                                                             <  1:1197343/73‑1 (MQ=255)
                                                                                                                                      tccTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCgg             <  1:3137963/147‑1 (MQ=255)
                                                                                                                                      cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCgg             >  1:3396345/1‑149 (MQ=255)
                                                                                                                                       gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTCGAAGCGGCTATTGCACGCGCAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt            >  2:1197406/1‑149 (MQ=255)
                                                                                                                                       gCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCAGTAGAAGCGGCTATTGCACGCGCAAAAGCAAGCAAGCTGGACCAGCATCAGGCTAATGccga            >  2:1197479/1‑146 (MQ=25)
                                                                                                                                         tATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTAGAAGCGGCTATTGCACgcgc                                                   >  1:1197422/1‑108 (MQ=255)
                                                                                                                                         tATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCg                                                                                                               <  1:1197347/49‑1 (MQ=255)
                                                                                                                                          aTTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc         >  2:1197433/1‑149 (MQ=255)
                                                                                                                                              cccGTGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCg                                                                                                               <  2:1197350/44‑1 (MQ=255)
                                                                                                                                              cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa     >  2:1197450/1‑149 (MQ=255)
                                                                                                                                                 gAGCCAAAGCTCGCAAACGGGAAGAGCAACAGGCTAATGACGAGCCAGAACAACACCTAGATCCGCGCTA‑AGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAgaagaa  <  2:1197351/149‑1 (MQ=14)
                                                                                                                                                  |                                                                                                                                                    
GAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAA‑AGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAA  >  U00096/1708755‑1709048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑