Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 2,212,753 | 0 | A | C | 23.1% | 431.8 / 39.1 | 161 | Y241D (TAT→GAT) | hcaT | predicted 3‑phenylpropionic transporter |
Reads supporting (aligned to +/- strand): ref base A (109/14); new base C (0/37); total (109/52) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.58e-25 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 203 total aligned reads displayed.
CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCGGT > AP012306/2212604‑2212900 | cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATa < 2:2252313/150‑1 (MQ=255) cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATa < 2:1205907/150‑1 (MQ=255) cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACCCCCAGCGACCACAAATa > 2:1486915/1‑150 (MQ=255) cGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATAccc < 2:554175/150‑1 (MQ=255) cGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATAccc < 1:3413901/150‑1 (MQ=255) gCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATAcccc < 1:3243801/150‑1 (MQ=255) ccGTAGTTGCTCCCATAATGCCCCAGCGCGCTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCa < 2:1118441/150‑1 (MQ=255) ccGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCa < 1:682497/150‑1 (MQ=255) ccGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGATTATTACTCCGCGCAAAGATAATGACCTCCGCCACCACGCCCAGCGACCCCAAAGACCCCa > 2:885217/1‑150 (MQ=255) gTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCAcc < 1:1427446/150‑1 (MQ=255) gTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCAcc > 2:2484195/1‑150 (MQ=255) aGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCAccgc < 1:3631717/150‑1 (MQ=255) gTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCAccgcc < 1:20869/150‑1 (MQ=255) cccATAATGCCCAAGCGCACTACGCCGCAAACCGCCGAGATCAACAGCATATCGCGTGCACTACACCGGCGA‑AAAAGTTTATTCCTCAGCGCAAAGATAAGGACTTCCGCCCCCCCGCCCAGCGACCACAAATACCCCACCgccgaggcc < 2:2140562/150‑1 (MQ=255) cATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCgccgaggccga > 1:267993/1‑150 (MQ=255) tAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGt > 2:3765704/1‑150 (MQ=255) aaTGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTa > 1:91697/1‑150 (MQ=255) gCCCCAGCGCCCTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGA‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTCCCGCCCCCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGcc < 2:4020247/150‑1 (MQ=255) gCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGcc > 1:2757403/1‑150 (MQ=255) gCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGACAATGACTTCCTCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGGCGAGAAgac > 2:630217/1‑148 (MQ=255) ccccAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑CAAAGCTTATTACACAACGCAAAGACAATGACTTCCGCCACCACGCCCAGCGACCACAAAAACCCCACCGCCCAGGCCGAGAAACCa > 2:1654581/1‑150 (MQ=255) cAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGct > 1:1979690/1‑150 (MQ=255) cAGCGCACTACGCCGAAAACCGCCGAAATCAACAGCATACCGCGTGCACTACAACGGCGA‑AAAAGTTTATTCCCCAGCGCAAAGATAAGGACTCCCGCCACCCCGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGct < 2:1878843/150‑1 (MQ=255) cgcACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGA‑AAAAGTTTATTACCCAGCGAAAAGATAATGCCTCCCGCCCCCCCGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGctgcc < 2:1731165/150‑1 (MQ=255) gcACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGAAAAGATAATGACTCCCGCCCCCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGctgcct < 2:3559296/150‑1 (MQ=255) caccacGCCGCAAATCGCCGAGACCAACAGCATACCGCGTGCCCTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGCCTTCCGCCCCCCCCCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGctgcctg < 2:14188/150‑1 (MQ=255) cTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCCGCGACCACAAATAACCCACCCCCGAGGGCGAGTAAACAGCggcccgcc > 2:1001531/1‑150 (MQ=255) aCGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCTCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAg > 1:1486738/1‑150 (MQ=255) gccgcAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTa > 1:4077773/1‑150 (MQ=255) gccgcAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTa > 1:1590142/1‑150 (MQ=255) ccgcAAACCGCCGAGACCAACAGCATACCGCGTGCACTACAACGGCGA‑AAAATTTTATTCCTCAGCGCAAAGATAATGACTCCCGCCCCCACGCCCAGCGCCCAAAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTaa < 2:2291950/150‑1 (MQ=255) cgcAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTaaa > 1:2543583/1‑150 (MQ=255) gaaaaCCGCCGAGATCAACAGCATACCGCGTGCACTACAACGGCGA‑AAAAGTTTATTCCCCAGCGAAAAGATAATGACTCCCGCCCCCCCGCCCAGCGCCCAAAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAAt < 2:261112/148‑1 (MQ=255) aaaTCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATgg > 1:2035764/1‑150 (MQ=255) aaaTCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAACTGCCTGCCAGTAAATgg > 2:1773548/1‑150 (MQ=255) accGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGA‑AAAATTTTATTCCCCAGCGAAAAGATAATGCCTCCCGCCCCCCCGCCCAGCGCCCAAAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGgcg < 2:3691356/148‑1 (MQ=255) gCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTa > 1:4064681/1‑150 (MQ=255) cccGAGATCAACAGCATATCGCGTGCACTCCAGCGGCGG‑AAAATTTTATTACCCAGCGCAAAGATAAGGCCCCCCCCCACCCCGCCCAGCGACCAAAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTa < 2:2795267/149‑1 (MQ=255) ccGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaa > 2:512304/1‑150 (MQ=255) cGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaa > 2:1585996/1‑150 (MQ=255) cGAGATAAACAGCTTATCGCGTGCCCCACACCGGGGA‑AAAAGTTTATCACGCAGCGCAAAAAAAAGGCCTTCCCCATCCCGGCACAGCCACCAAAAAAACCCCTCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaa < 2:2509859/150‑1 (MQ=255) gaTCAACAGCATACCGCGGGCACTCCAACGGCGA‑AAAATTTTATTCCCCAGCGCAAAGAAAATGCCTCCCGCCACCACGCCCAGCGACCACAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAcc < 2:561811/150‑1 (MQ=255) aCAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt < 1:178445/150‑1 (MQ=255) atatCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGCAACCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 2:3910346/1‑150 (MQ=255) cgcggccACTACACCGGCGA‑AAAAGTTTATTACCCAGCGAAAAAATAATGCCTCCCGCCACCACGCCCAGCGACCAAAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAt < 2:2837472/144‑1 (MQ=255) cgcgTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAt > 1:2311462/1‑150 (MQ=255) cgcgTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAt > 1:3428415/1‑150 (MQ=255) cgTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgt > 2:4131807/1‑150 (MQ=255) gTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgtg > 2:3074856/1‑150 (MQ=255) gTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgtg > 1:3099073/1‑150 (MQ=255) gTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAATAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgtg > 1:220839/1‑150 (MQ=255) cAACGGCGA‑AAAAGTTTATTCCCCAGCGAAAAGATAATGCCTCCCCCCCCCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGc < 2:3437560/150‑1 (MQ=255) aaCGGGGGAAAAATTTTATTACCCAGCGCAAAGAAAATGACTCCCGCCCCCACCCCCAGCGACCACAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGc < 2:218401/150‑1 (MQ=255) aCGGGGA‑AAAAGTTTATTCCCCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCaa < 1:1271362/150‑1 (MQ=255) ggcgg‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATa > 1:1861754/1‑150 (MQ=255) aaaaGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaa > 1:481068/1‑150 (MQ=255) aaGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaaac > 2:2361771/1‑150 (MQ=255) attttATTCCCCAGCGAAAAGAAAATGCCTCCCGCCACCCCGCCCAGCAACCAAAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg < 2:3314031/148‑1 (MQ=255) gTTTATTACTCAGCGCAAAGATAATGACTCCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAATCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGc < 1:2371749/150‑1 (MQ=255) ttattaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAg > 1:3139387/1‑150 (MQ=255) tattaCTCAGCGCAAAGATATTGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAgg > 2:3267512/1‑150 (MQ=255) attcCTCAGCGAAAAGATAATGACTCCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGc < 1:4261455/150‑1 (MQ=255) attaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGc > 2:829267/1‑150 (MQ=255) cctaaGCGAAAAGATAATGACTCCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAg < 1:418891/146‑1 (MQ=255) cTCAGCGCAAAGAAATTGACTTCCGCCCCCACGCCGAGCACCCACAAATGCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAACGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGa < 1:2957971/150‑1 (MQ=255) cagccaaaaGAAAATGACTCCCGCCGCCCCGCCCAGAGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaaa < 1:2622460/144‑1 (MQ=255) cAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaac > 2:3500476/1‑149 (MQ=255) cAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaaa > 1:1737153/1‑150 (MQ=255) cAGCGCAAAGATAATGACTCCCGCCCCCACGCCAAGCGACCACAAATCCCCCACCTCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaaa < 1:4001348/150‑1 (MQ=255) aGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAg > 1:1251181/1‑150 (MQ=255) aGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAg > 2:3144021/1‑150 (MQ=255) gcgcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgc < 1:3996165/150‑1 (MQ=255) cgcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcg > 1:3780589/1‑150 (MQ=255) gcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcgc > 2:130606/1‑150 (MQ=255) gcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcgc > 2:215460/1‑150 (MQ=255) gcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcgc > 1:1190128/1‑150 (MQ=255) gcAAAGATAATGACTCCCGCCACCCCGCCCAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcgc < 1:1405490/150‑1 (MQ=255) cAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGcc > 1:3533516/1‑150 (MQ=255) cAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTG‑CCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCa > 1:176680/1‑150 (MQ=255) aaaGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCa > 1:1347655/1‑150 (MQ=255) tAATGACTCCCGCCCCCCCGCCCAGCGCCAACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt < 2:4021674/150‑1 (MQ=255) aaTGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTg > 1:3052733/1‑150 (MQ=255) tgccTTCCGCCACCACGCCCAGCGCCCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGc < 1:2441364/147‑1 (MQ=255) tGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGc > 1:2849896/1‑150 (MQ=255) tGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGc > 1:2786834/1‑150 (MQ=255) tGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGc > 1:1640329/1‑150 (MQ=255) ccGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCa > 1:3924800/1‑150 (MQ=255) ccaccaCGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgcg > 1:3667276/1‑150 (MQ=255) acGCCCAGCGACCAAAAACCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAAc < 2:182727/150‑1 (MQ=255) gCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCa > 1:1121600/1‑150 (MQ=255) gCCCAGCGACCAAAAATCCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCa < 2:2059364/150‑1 (MQ=255) cccAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCAc > 2:425245/1‑150 (MQ=255) cccAGCGACCAAAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCAc < 2:2673617/150‑1 (MQ=255) cccAGCACCCAAAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCAc < 2:443677/150‑1 (MQ=255) cAGCGACCACAAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGc < 1:1500992/150‑1 (MQ=255) aCCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGAcc > 1:1000902/1‑150 (MQ=255) ccACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCa > 1:3460775/1‑150 (MQ=255) acaAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAAc > 2:6724/1‑150 (MQ=255) caAATCCCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAAcc < 1:355357/150‑1 (MQ=255) aaaTACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCg > 2:1881326/1‑150 (MQ=255) | CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGG‑AAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCGGT > AP012306/2212604‑2212900 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |