| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | = 1178769 | 274 (0.900) | 6 (0.020) | 6/274 | 12.0 | 2.3% | coding (451/843 nt) | ycjP | predicted sugar transporter subunit |
| ? | AP012306 | = 1178757 | 253 (0.900) | coding (439/843 nt) | ycjP | predicted sugar transporter subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/1178609‑1178769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccatggtgaTGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGAAAGCGCG < AP012306/1178757‑1178609 CGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCAT < 1:1373493/150‑1 GCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATC > 2:3671476/1‑150 CGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCA < 1:2656719/150‑1 CGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCA < 1:3461281/150‑1 GCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCAC > 1:3272837/1‑150 TTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCA < 2:335956/150‑1 TTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCA < 2:1365493/150‑1 TTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCAT > 1:2593920/1‑150 TCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATG < 2:2210482/150‑1 TCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATG > 1:607609/1‑150 CCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGG > 2:3092399/1‑150 CCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGT < 1:740611/150‑1 CGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTG > 2:4022559/1‑150 GCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGA < 2:982231/150‑1 ACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGG > 1:3863364/1‑145 ACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGG < 2:3863364/145‑1 GTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTT < 2:2215829/150‑1 TGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCA > 1:3579169/1‑98 GGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCG < 1:2215829/150‑1 TGAGATGGCGCTGATCATCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCA > 2:3579169/1‑98 TCACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGC > 2:1366476/1‑150 CACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCG > 1:3200787/1‑150 CACCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCG > 1:2654703/1‑150 CCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGG < 2:1722779/150‑1 CCATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGG < 1:251310/150‑1 CATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGA < 2:2284723/150‑1 CATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGA > 2:1398588/1‑150 CATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGA < 2:4148558/150‑1 ATGGTGATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGAA < 2:1365652/150‑1 ATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGAAAGCGCG > 2:3600660/1‑150 ATGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGAAAGCGCG > 2:447236/1‑150 CGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTGCTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/1178609‑1178769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccatggtgaTGATCAGCGCCATCTCAGTGTCGTAAATGCCAAGCGCGGTGATGATTTTGAAAAGCGGCACCACCAGCAAAATGCCAGAGAACATATACACCGTGTAAAAGCTGGCGTTGATGGTCATCCGACCTTTAAAGCGCAGGCGGGAAAGCGCG < AP012306/1178757‑1178609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |