Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 3,716,932 | 0 | T | A | 24.1% | 564.1 / 128.7 | 228 | intergenic (‑348/‑45) | acs/nrfA | bifunctional acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
Reads supporting (aligned to +/- strand): ref base T (156/17); new base A (0/55); total (156/72) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.32e-38 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 245 total aligned reads displayed.
AAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAAC > AP012306/3716783‑3717079 | aaaGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGCTTACTGTCGTGAAAAACAATa > 1:2820536/1‑150 (MQ=255) aaGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaa < 1:1265968/150‑1 (MQ=255) agagGAAGATACTGACTAACTCTAAAGGGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa > 1:1156305/1‑150 (MQ=255) gagGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 2:1007878/150‑1 (MQ=255) gagGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaaa > 2:441522/1‑150 (MQ=255) gAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑cc < 2:513510/150‑1 (MQ=255) aaGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCg > 2:2145294/1‑150 (MQ=255) aaGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCg > 2:2377862/1‑150 (MQ=255) aaGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCg < 1:2800736/150‑1 (MQ=255) aGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGc < 1:386070/150‑1 (MQ=255) aTACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCa > 2:531229/1‑150 (MQ=255) aTACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCa > 2:3175111/1‑150 (MQ=255) tACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCAt > 2:2040920/1‑150 (MQ=255) cTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTg > 2:1737491/1‑150 (MQ=255) gACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAC‑CCGCCATTGca > 1:5664/1‑150 (MQ=255) cTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGcaac > 1:2704794/1‑150 (MQ=255) aaCTCTAAAGTGTTTTTTTACATGCCTTTAAAATTGATTAAAAACAACATTCACAGTTTGGTTATTTTTTACACATAGGGGCAAGAAATGTA‑ATGACAGTGTAGGTGCGTTTACTGTCGAAAAAAACAAAAAAAA‑CCGCCATTGcaacaa < 2:1221328/150‑1 (MQ=255) aaCTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGcaacaa > 1:3745442/1‑150 (MQ=255) aCTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAAt > 2:1792993/1‑150 (MQ=255) ctctAAGGTGGTATTTTACATGCATTTAAAATTAATTAAAGACAACATTCAAAGTGTGTTTATTTGTAACAAATGGGGGCGAAAAATGTC‑ATGACGGTGGGGGTGGGGTTCTTGTCGAAAAAAAAAATAAAAA‑CCGCCATTGCAACAATg < 2:287736/150‑1 (MQ=255) tctAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTGGGTGCGGTTACTGTCGTGAAAAACAAAAAAAA‑CCGCCATTGCAACAATgg < 1:2171371/150‑1 (MQ=255) tAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGgcg > 1:1209267/1‑150 (MQ=255) tGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAAtt > 2:805079/1‑150 (MQ=255) gTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCg > 1:4246280/1‑150 (MQ=255) gTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCg > 1:1082298/1‑150 (MQ=255) tATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCgg > 2:4180727/1‑150 (MQ=255) tACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGaa > 2:3163428/1‑150 (MQ=255) tACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGaa > 1:330388/1‑150 (MQ=255) aTGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGcc > 1:1789579/1‑150 (MQ=255) cACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTCGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CTGCCATTGCAACAATGTCGCAATTCGGATGAAGCCCCt > 1:1941308/1‑150 (MQ=255) tttAAAATTGATAAAAGAAAAAATTCAAAGTGTGGTTTTTTGTTACAAAGGGGGGCGAGAAATGTC‑ATGAAAGTGTGGGGGGGGTTACTGTGGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTAt < 2:1465043/149‑1 (MQ=255) cTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTAt > 1:503341/1‑150 (MQ=255) aCAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGAc > 1:2196607/1‑150 (MQ=255) cAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACa > 2:764329/1‑150 (MQ=255) cAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACa > 1:397171/1‑150 (MQ=255) cAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACa > 2:2299276/1‑150 (MQ=255) tGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGa > 1:1679571/1‑150 (MQ=255) tGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGa > 2:4200450/1‑150 (MQ=255) ataaaaGACAACTTTCACGGTGTGTTTTTTTTTTAAACAAGGGGGCGAGAAAGGCA‑ATGAAAGTGTGGGGGGGTTTACTGTGGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATa < 2:1493728/147‑1 (MQ=255) ttAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaa > 1:2344818/1‑150 (MQ=255) tAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaaa > 2:3683942/1‑150 (MQ=255) aaGAAAACATTCACGGTGTGGTTTTTTGTAACAAATGGGGGCGAGAAATGTA‑ATGACAGTGTGGGGGGGGTTACTGTGGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaaaaa < 2:2571955/150‑1 (MQ=255) aGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAAt > 2:1887373/1‑150 (MQ=255) gACAACATTCACGGTGTGGTTATTTGTTACACAGGGGGGCGAGCAATGTC‑ATGACAGTGGGGGTGGGGTTACTGTCGTAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATa < 1:3637556/150‑1 (MQ=255) acaacaTTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATaa > 1:3549357/1‑150 (MQ=255) caacaTTCACGGTTTGTTTTTTTTTTACGAAGAGGGGCGAAAAATGTC‑AGGCAAGTGTAGGTGGGTTTACGGTCGGAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATaaa < 2:658775/150‑1 (MQ=255) aacaTTCACAGTGTGGTTATTTGTTACACAAAGGGAAAAGAAATGAC‑ATGACAGTGTAGGGGCGGTTACTGTGGTGAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAac < 2:182171/150‑1 (MQ=255) acaTTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacg > 1:2305530/1‑150 (MQ=255) caTTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacgc > 1:306562/1‑150 (MQ=255) aTTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacgca > 1:1575161/1‑150 (MQ=255) aTTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAacgca > 1:2592816/1‑150 (MQ=255) cctgtgtgtTTTTTTGTTCCAAAAGGGGCCGAGAAATGTC‑ATGCCGTTGTAGGTGCGTTTCCTGTCGTAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGcc < 2:617519/147‑1 (MQ=255) actgtgtgtTTTTTTTTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTGGGTGCGGTTACTGTCGAAAAAAACAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGcc < 2:4016737/147‑1 (MQ=255) acaGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGcc > 2:1302414/1‑150 (MQ=255) tgtgGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTAt > 2:1138339/1‑150 (MQ=255) gtgGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATc > 2:3078606/1‑150 (MQ=255) tgGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCt > 2:3327738/1‑150 (MQ=255) aTTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGc > 1:3275108/1‑150 (MQ=255) tGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTa > 1:1379876/1‑150 (MQ=255) tGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTa > 2:3717118/1‑150 (MQ=255) ttACAAAAAGGGGGGAAAAATGTCAATGATGGTGTGGGTGGGTTTACTGGGGAAAAAAAAAAAAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTAt < 2:2189042/150‑1 (MQ=255) tACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTg > 1:851842/1‑150 (MQ=255) gacacATGGGGGAGAGAAGTGTA‑ATGAGGGGGTAGGGGTTGTTTGTTTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTg < 1:3525316/149‑1 (MQ=255) acaggggggCGACAAATGTA‑ATGACGGTGTGGGGGGGGTTATTGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGAtt < 1:544948/145‑1 (MQ=255) caTAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTc > 1:2619276/1‑150 (MQ=255) ggggggAGAAATTTC‑AGGACGGGGGGGGTGCGGTTCCTGGCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCttt < 1:2935434/150‑1 (MQ=255) ggggCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCttt > 1:3207701/1‑150 (MQ=255) ggggGAGAAATGTC‑ATGACGGTGTGGGTGGGGTTCCTGCGGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCtttt < 1:1903321/150‑1 (MQ=255) gCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCtttttt > 2:191619/1‑150 (MQ=255) gCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCtttttt > 2:1642883/1‑150 (MQ=255) cGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttc > 1:2401611/1‑150 (MQ=255) gAGCAATTTC‑ATGACGGTGTGGGTGGGTTTATTGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttct < 1:3779037/150‑1 (MQ=255) aGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttctt > 2:2843173/1‑150 (MQ=255) gCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGTGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttcttt > 1:1113390/1‑150 (MQ=255) attGTC‑AGGAAGGTGTGGGGGCGTTTACTGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttcttttt < 1:4041117/148‑1 (MQ=255) aaTGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttcttttt > 2:3763823/1‑150 (MQ=255) aTGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttctttttc > 2:3469620/1‑150 (MQ=255) tGTC‑ATGACGGTGTGGGGGGGTTTCCTGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCa < 1:3879682/150‑1 (MQ=255) tGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCa > 1:1707152/1‑150 (MQ=255) tGTA‑ATGACAGTGGGGGGGGGGTTCTTGTTGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCa < 2:3932672/150‑1 (MQ=255) aggACGGTGTAGGCGCGGTTACGGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTACTGATTCCTTTTTTCTTTTTCACTTc < 1:706450/148‑1 (MQ=255) gACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTg > 2:2984983/1‑150 (MQ=255) acgttggaGGGGCGTTTCCTGTGGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGt < 2:71399/143‑1 (MQ=255) tgtAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCAc > 2:1665022/1‑150 (MQ=255) ggaGGTGCGTTTCCTGTGGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACg < 1:616012/148‑1 (MQ=255) tAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGc > 1:228182/1‑150 (MQ=255) tAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGc > 2:1873320/1‑150 (MQ=255) aGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCt > 1:3843755/1‑150 (MQ=255) gCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAAc > 2:273548/1‑150 (MQ=255) ggTTATTGTAGAAAAAAAAAAAAAAAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACaa < 2:3570229/150‑1 (MQ=255) ggTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACaa > 2:3952442/1‑150 (MQ=255) gTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACaaa > 2:3421083/1‑150 (MQ=255) ttACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAAc > 2:3100630/1‑150 (MQ=255) ctcgTCGAGAAAAAAAAAAAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACg < 2:2712376/147‑1 (MQ=255) cTGTCGAAAAAAAAAAAAAAAC‑CCGCCATTGAAACAATGGCGCAATTCGGATGAAGCCCCTATGAAAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGgc < 2:437238/150‑1 (MQ=255) gTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTc > 2:1271469/1‑150 (MQ=255) aaaaaaaaaaaaaaAC‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTcc < 1:3222252/148‑1 (MQ=255) aaaaaaaaaaaaaTT‑CCGCCATTGCAAAAAGGGTGCATTTCGGATGAATCCCATATGAAAAGAATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTccc < 2:2624209/149‑1 (MQ=255) aaTAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAAc > 1:740910/1‑150 (MQ=255) aaTAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAAc > 2:877107/1‑150 (MQ=255) | AAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTC‑ATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAA‑CCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAAC > AP012306/3716783‑3717079 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |