| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | = 2275071 | 224 (0.750) | 45 (0.170) +GTATCAGTCTGCTTCGCAAG |
5/258 | 9.7 | 15.9% | noncoding (1/76 nt) | gltW | tRNA‑Glu |
| ? | AP012306 | = 3597478 | 326 (1.100) | intergenic (+65/‑107) | rrsB/gltT | 16S ribosomal RNA (rrnB)/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/2274966‑2275071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < AP012306/3597478‑3597435 |||||||||||||||||||| gcgggtaACTTTCCCTCACAAACCAGCAAGGGGCGCCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATC < 1:1425925/143‑1 ACTTTCACTCACAACCCAGCAAGTGGCGCCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT < 1:3563097/150‑1 ACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT > 1:3946795/1‑150 ACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT > 1:1554366/1‑150 ACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT > 2:562422/1‑150 ACTTTCACCCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT < 1:1737013/150‑1 ttcCACTCACAACCCAGCAAGGGGCCCCCCCTGGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 2:2620586/147‑1 TTTCACTCACAACCCAGCAAGTGGCGTCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 1:272262/150‑1 TTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT > 1:1609797/1‑150 tcccCTCACAACCCACCACGTGGCCCCCCCGAGGGCATTC‑AACCCCCTTTTCCCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTG < 2:3822726/146‑1 TTCACTCACAAACCAGCAGGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTG > 2:3684121/1‑150 TTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTG > 1:2629693/1‑150 tccCTCACAAACCAGCAAGGGGCGCCCCCTGGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT < 1:3214488/147‑1 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT > 1:1105849/1‑150 ccCTCACAACCCAGCAGGGGGCGCCCCCTGGGGGATTC‑GACCCCCTTTTCCCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTG < 2:2542736/148‑1 ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT < 2:1711257/150‑1 ACTCAAAACCCAGCAAGTGGCGCCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT < 2:2606194/150‑1 CTCACAACCTAGCAAGTGGCGCCCTCTGGGGGTTTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG < 1:1228826/150‑1 CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG > 1:510496/1‑150 CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG > 1:2807453/1‑150 CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG > 1:942749/1‑150 CTCACAAACCACCAAGTGCCGCCCCCTAGGGGATTC‑GACCCCTTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG < 1:3147261/150‑1 CTCAAAAACCAGAAAGTGGCGCCCCCTAGGGGATTC‑GACCCCTTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG < 2:497787/150‑1 CACAAACGAGCAAGGGGCGCCCCCGAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 2:1006172/150‑1 CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG > 2:345337/1‑150 CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 1:587100/150‑1 CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAAAGCGGTGTCCTGGGCCTCTAGACGAAGGGGGCGTATCAGTCTCCTTCGCAGGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG > 2:12225/1‑150 CACAAACCAGCAAGTGGCGCCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 1:3032944/150‑1 CACAAACCAGAAGGGGGCGCCCCCTAGGGGTTCC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 1:3506372/150‑1 aaAAACCAGGAAGGGGGGGCCCCGTGGGGGTTCAGACCCCTTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 2:1936600/148‑1 ACACACCAGCAAGGGGCGCCCCCTGGGGTATTC‑GACCCCTTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGC < 2:1797878/150‑1 ACAACCCAGCAGGTGGCGCCCCCTGGGGGATTC‑GACCCCCTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGC < 2:2492055/150‑1 ACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGC > 1:786152/1‑150 ACAAACCAGAAAGGGGCGTCCCCGAGGGGATTC‑GACCCCCTGTTCCCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGC < 2:385465/150‑1 aaacCCAGCAAGGGGCGCCCCCTGGGGGATTC‑GACCCCTTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 2:2916424/146‑1 aAAACCAGCAAGGGGCGCCCCCTGGGGGTTTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 1:1763369/149‑1 CAACCCAGCAAGGGGCGTCCCCTAGGGGATCC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 2:1355582/150‑1 CAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA > 1:882945/1‑150 CAAACCAGAAAGGGGCGCCCCCGAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 1:3919345/150‑1 aacCCAGCAGGGGGCGCCCCTTGGGGGATTC‑GACCCCCTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC < 2:2300777/147‑1 AAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 1:792601/1‑150 AAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 2:1672495/1‑150 AAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 1:2493966/1‑150 AAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGACCTCTAGACGAAGGGGACGTATCAATCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 2:642988/1‑150 AACCAGCAAGTGGCGCCCCCTAGGGGATTC‑GACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < 1:257854/150‑1 |||||||||||||||||||| GTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC‑GAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/2274966‑2275071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < AP012306/3597478‑3597435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |