Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 800,675 | 0 | A | C | 29.3% | 533.9 / 40.3 | 240 | T192P (ACC→CCC) | lolA | chaperone for lipoproteins |
Reads supporting (aligned to +/- strand): ref base A (137/32); new base C (0/70); total (137/103) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.20e-36 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 292 total aligned reads displayed.
GCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACA > AP012306/800526‑800824 | gCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑Ca < 1:704470/150‑1 (MQ=255) tGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAcccc < 1:2012832/150‑1 (MQ=255) cAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCccgcc < 2:163438/150‑1 (MQ=255) tCTGAAGCAGTTCACAATTAACGGGGGACGGGATGGCACAATCCATCAGTTTAGCGCGGTGGAGGAGGACGATCAGCGCAGCAGTTATCAACTGAAACCCCAGCAAAATGGGGCTGGGGATGCAGAGAATTTTCCCTC‑CCCCCCGCCGCa < 2:3584633/150‑1 (MQ=255) cTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCaa > 2:2337671/1‑150 (MQ=255) aaGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGc > 1:2865338/1‑150 (MQ=255) aaGCAGTTCACCATTAACGTGGGACGTGATGGCACAACCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTAAAACCCCAGAAAAAGGGGGCTGTGGATGCAGCAAAATTTACCTT‑CCCCCCGCCGCAAGGc < 2:599430/150‑1 (MQ=255) aGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCg < 2:3797729/150‑1 (MQ=255) gCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGt > 1:518700/1‑150 (MQ=255) ccAGTCCACCATTAACGTGGGACGTGATGGCAAAATCCATCAGTTTAGCGCGGGGGAGAAGGACGATCAGCGCAGCAGTTATCACCTGAAACCCCAGAAAAAGGGGGCTGGGGATGCAGCGAAATTTCCCTC‑CCCCCCGCCGCAAGGCGt < 2:365219/149‑1 (MQ=255) cAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTc > 1:787510/1‑150 (MQ=255) cAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTc > 1:3393146/1‑150 (MQ=255) gTTCACCATTACCGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCAc < 2:3531122/150‑1 (MQ=255) tCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACgg < 1:3881586/150‑1 (MQ=255) ttAGCGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCGGGACGATCAGCGCAGCAGTTATCAACTAAAATCCAAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAgatg < 1:561736/150‑1 (MQ=255) ttAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAgatg < 1:1531967/150‑1 (MQ=255) aaCGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAgatgat > 2:3117998/1‑150 (MQ=255) cGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCa > 2:2527829/1‑150 (MQ=255) gTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCaa > 1:3375606/1‑150 (MQ=255) aCGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTaa < 2:1368704/150‑1 (MQ=255) cGTGATGGCAAAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAAGGGGGCTGTGGAGGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAg < 1:1706994/150‑1 (MQ=255) gTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGt > 2:2757900/1‑150 (MQ=255) tGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTa > 2:289559/1‑150 (MQ=255) aTGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTaga < 1:992435/150‑1 (MQ=255) tGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGAGGCAGCAAATTTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTagag < 2:3860714/150‑1 (MQ=255) cacaATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCa > 1:1410219/1‑150 (MQ=255) cacaATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCa > 1:1159898/1‑150 (MQ=255) caATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCAcc > 1:3106985/1‑150 (MQ=255) caACCCATCAGTTTAGCGCGGTGGAGAAGGACGATCAGCGCAGCAGTTATCAACTAAACCCCCAGCAAAATGGGGCTGTGGATGAAGCGAAATTTACCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCAcc < 2:1220506/150‑1 (MQ=255) aTCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtg < 1:161470/150‑1 (MQ=255) ccATCATTTAAGCGCGGTGGGGCAGGCCAATCGGCCCAGAATTTATCAACTGAAATCCCAGAAAATGGGGGTTGTGGACGCAGCGAATTTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgag < 2:657991/150‑1 (MQ=255) ccATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgag > 2:933068/1‑150 (MQ=255) cATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagt > 1:1366600/1‑150 (MQ=255) tCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGAAAAATGGGGTTGGGGATGCAGAGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtga < 2:829000/150‑1 (MQ=255) ccgTTTACCGCGGTGGAGCGGGCCGATCCCCCCCGCATTTACCAACTCAAACCCCAGCAAAATGGGGCTGTGTCTCCCCCCAAATTTCCCTC‑CCCCCCGCCCCAAGGCGTCCCGGTAGATGATCAACGTAAGTAGAGGCACCtgagtgag < 2:3173035/148‑1 (MQ=255) cAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGAAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtgag < 1:858173/150‑1 (MQ=255) aGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGc > 2:2039958/1‑150 (MQ=255) gcgcGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTg > 1:3632807/1‑150 (MQ=255) gcgcGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTg > 2:1695834/1‑150 (MQ=255) gcgcGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAACCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTg < 2:1106516/150‑1 (MQ=255) gTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTAAAACCCCAGAAAAATGGGGCTGGGGATGCAGCAAAATTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCt < 2:3560079/150‑1 (MQ=255) tGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTc > 2:282612/1‑150 (MQ=255) ggAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGAAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCg < 2:1025221/150‑1 (MQ=255) aGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAt < 1:2319199/150‑1 (MQ=255) aGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAt > 1:3791133/1‑150 (MQ=255) gCAGGCCGATCAGCGCAGCAGTTATCACGTCAAACCCCAGAAAAATGGGGCTGTGGAGGCGGCGAAATTTCCTTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAtt < 2:1729837/150‑1 (MQ=255) cAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAttt > 1:1033325/1‑150 (MQ=255) cAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAttt < 1:3935696/150‑1 (MQ=255) ggACGATCAGCGCAGCAGTTATCAACTGAAACCCCAGAAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAttttt < 2:3486364/150‑1 (MQ=255) cGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCgg > 2:3390409/1‑150 (MQ=255) gATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGa > 2:4049432/1‑150 (MQ=255) gATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGa > 1:2603525/1‑150 (MQ=255) cAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGataa < 1:2293533/150‑1 (MQ=255) aGCGCAGCAGTTATCAACTGAAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGataat < 2:1285933/150‑1 (MQ=255) cgcAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATAc > 2:2061192/1‑150 (MQ=255) cagcagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtt < 2:3904754/150‑1 (MQ=255) cagcagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGTTAATACtt > 2:3744733/1‑150 (MQ=255) cagcagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtt < 1:2895479/150‑1 (MQ=255) cagcagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtt > 1:2799805/1‑150 (MQ=255) gcagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtttt < 1:1567901/150‑1 (MQ=255) gcagTTATCAACTGAAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCATCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtttt < 1:2254493/150‑1 (MQ=255) cagTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTc > 1:1689675/1‑150 (MQ=255) tATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAAcc > 2:191609/1‑150 (MQ=255) tATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAAcc > 2:1142359/1‑150 (MQ=255) aTCAACTGAAATCCCAGCAAAATGGGGCTGTGGAAGAAGAGAAAGTAACCTT‑CACCCCGCCGAAAGGCGGCACGGGAGATGATCAAGGTAAGGAGAGGAACCTGAGCGAGCAATATGTCGGTCGATTTTTTGGATAATACGTTTCACCct > 2:3081464/1‑150 (MQ=255) aTCAACTAAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAATTTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACct < 2:1988357/150‑1 (MQ=255) cAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACctct > 2:1803620/1‑150 (MQ=255) cAACTGAAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACctct < 2:2956629/150‑1 (MQ=255) cTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGc < 1:1804505/150‑1 (MQ=255) cTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGc > 1:352441/1‑150 (MQ=255) aaccccAGCAAAATGGGGCTGTGGATGCAGCAAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCcgcg < 2:901449/147‑1 (MQ=255) ccAGCAAAAGGGGGTTGTGGATGCAGCGAAATTTCCCTT‑CGCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGTGCGTa < 1:3246124/150‑1 (MQ=255) cAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTAGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTAt > 2:451010/1‑150 (MQ=255) cAGCAAAATGGGGCTGTGGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTAt < 2:2317085/150‑1 (MQ=255) aGCAAATTGGGCGTGGGGATGCGGCAAAATTTGCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATg < 1:2040914/150‑1 (MQ=255) aGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATg < 1:763382/150‑1 (MQ=255) gaaaaaGGGGGCTGTGGATGCAGCAAAATTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGc < 2:711026/148‑1 (MQ=255) gCAAAATGGGGCTGGGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGc < 2:3258530/150‑1 (MQ=255) aaaTGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGc > 2:2574161/1‑150 (MQ=255) tGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAg < 1:3342855/150‑1 (MQ=255) ggggCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGa < 1:125599/150‑1 (MQ=255) ggCTGGGGATGCAGC‑AAATTTTCCTTCCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaaa < 2:2987082/150‑1 (MQ=255) gCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaaaa < 1:3705355/150‑1 (MQ=255) gCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaaaa > 2:1264437/1‑150 (MQ=255) tgtgGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAAtt < 2:1434210/150‑1 (MQ=255) gtgGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAAttt < 2:1579052/150‑1 (MQ=255) tgGATGCAGCGAAATTTCCCTA‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTa < 2:1253045/150‑1 (MQ=255) gATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGc > 1:3330350/1‑150 (MQ=255) gCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGcaca < 2:767139/150‑1 (MQ=255) gAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGtata > 1:2980709/1‑150 (MQ=255) aaaTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTatat > 2:2136186/1‑150 (MQ=255) aaTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATc < 1:2143803/150‑1 (MQ=255) aTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCg > 1:1930839/1‑150 (MQ=255) tttACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCgg < 1:3472814/150‑1 (MQ=255) tttACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGAAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCgg > 2:2282913/1‑150 (MQ=255) tACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGcc > 1:2395396/1‑150 (MQ=255) tACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGcc > 2:2712006/1‑150 (MQ=255) tACCTC‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGcc < 1:1461936/150‑1 (MQ=255) ccTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAg > 2:2164862/1‑150 (MQ=255) cTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGc < 1:3428623/150‑1 (MQ=255) | GCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACA > AP012306/800526‑800824 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |