New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP012306	644106 =	509 (1.570)	14 (0.040) +CCCGG	9/288	11.3	3.5%	noncoding (5/76 nt)	lysZ	tRNA‑Lys
	?	AP012306	= 2073541	301 (0.930)					intergenic (+1/‑46)	valX/valY	tRNA‑Val/tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/644217‑644106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCACTTC  <  AP012306/2073541‑2073460                                                                                                                 |||||||                                                                                   CGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑ATC‑CGGTGGTGGGTGATGACGGGATCGAACCGCCGACC                                                   >  2:3685401/1‑150                       tgtTAACAACTTTAAAATTGGGGGGTCGTGCAGGATTCGAACCTGCGACCATTTAATAAAAAGTCACCTGCTCTCCCAACTGAGCTAACG‑CCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCT                             <  2:1980671/147‑1                              gatttaaAAATGGGGGGGTCGTGCAGGATTCGACCCTGCGACCAATTGATAAAAAGTCACCTCCTCTACAAACTGAGCTACCG‑CCC‑GGGTGGGGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAG                      <  2:4381781/143‑1                                ttttaAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑ACC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCT                    <  1:1422111/145‑1                                ttttaAAATTGGGGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTCCCAACTGAGCTAACG‑CCC‑CGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCT                    <  2:4027966/145‑1                                   taAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTCCTCTCCCAACTGAGCTAACGCCCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGA                  <  2:3319352/148‑1                                    aAAATGGGTGGGTCGTGCAGGATTCGACCCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑CCC‑CGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGC                <  2:1252626/149‑1                                     AAATTGGTGGGTCGTGCAGGATTCGACCCGGCGCCCAATTGATTAAAAGTCACCTGCTCTCCCACCTGACCTACCG‑CCC‑CGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCT               <  2:2414183/150‑1                                     AAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑CCC‑CGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCT               <  1:1561694/150‑1                                     AAATGGGTGGGTCGTGCAGGATTCGAACCTGCGCCAAATTGATAAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑CCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCT               <  2:678252/150‑1                                        tggggGGGCCGTGCAGGATTCGACCCTGCGACCAATTGATTAAAAGTCACCTGCTCTCCCAACTGGGCTAACG‑CCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT            <  2:3325771/145‑1                                        TTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑CCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT            <  2:1962185/150‑1                                           GTGGGTCGTGAAGGATTGGAACCTGCGACAAATTGATTAAAAGTCACCTGCTCTACCACCTGGGCTACCG‑CCC‑GGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCAC         <  2:3748703/150‑1                                                   TGCAGGATTCGACCCTGCGACCATTTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑CCCGGGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCgatac  <  2:4177202/150‑6                                                                                                                 |||||||                                                                                   CGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/644217‑644106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCACTTC  <  AP012306/2073541‑2073460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.