Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 2,212,753 | 0 | A | C | 29.8% | 262.9 / 51.4 | 121 | Y241D (TAT→GAT) | hcaT | predicted 3‑phenylpropionic transporter |
Reads supporting (aligned to +/- strand): ref base A (78/7); new base C (0/36); total (78/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.17e-24 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 160 total aligned reads displayed.
CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCGGTGC > AP012306/2212604‑2212902 | cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATa > 2:3767248/1‑150 (MQ=255) cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATa > 2:719608/1‑150 (MQ=255) aCGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑cc < 1:1981893/150‑1 (MQ=255) ccGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCa > 1:3416207/1‑150 (MQ=255) ccGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCa > 2:2233384/1‑150 (MQ=255) gTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCAccgcc > 1:674577/1‑150 (MQ=255) gCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCgccgag > 1:1278863/1‑150 (MQ=255) gCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCgccgag > 2:3729208/1‑150 (MQ=255) tCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCgccgaggc > 2:414925/1‑150 (MQ=255) ccATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCGCCgccgaggccg > 1:3827925/1‑150 (MQ=255) ccATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCgccgaggccg > 1:920592/1‑150 (MQ=255) ccATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCgccgaggccg < 1:2752131/150‑1 (MQ=255) tAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGt < 1:3113930/150‑1 (MQ=255) gCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGcc > 2:3345495/1‑150 (MQ=255) ccccAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCa > 1:712870/1‑150 (MQ=255) ccccAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCa < 1:1346495/150‑1 (MQ=255) ccccAGCCCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTCCCGCCCCCCCGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCa < 2:2315045/150‑1 (MQ=255) cAGCGCACTACGCCGCAACTTGCCGCGATCAACAGCATATCGCGTGCACTACAACGGCGGGAAAATTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAAAA‑CCCCCCCGCCGAGGCCGAGTAGGCAGct > 2:3052167/1‑150 (MQ=255) cAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCCCGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGct < 2:3508917/150‑1 (MQ=255) cgcACTACGCCGCAAACCGCCGAGATCAACAGCATACCGCGTGCACTACACCGGCGAAAAAGTTTATTCCTCAGCGCAAAGATAATGCCTTCCGCCCCCCCGCCCGGCGCCCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGctgcc < 2:1621659/150‑1 (MQ=255) aCTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGctgcctgc < 1:1436363/150‑1 (MQ=255) tACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCa > 1:3697502/1‑150 (MQ=255) cgccgaAAACCCCCGAGACCACCAGAATACCGCGGCCACTACAACGGCGAAAAATTTTATTCCCCAGCCCAAAGAAAAGGCCTCCCGCCCCCCCCCCCAGCGCCCCAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGt < 2:1244676/150‑1 (MQ=255) gcAAATCGCAGAGATAAACAGCATATCGCGTGCACTACAACGGCGGAAAATTTTATTACTCAGCCAAAAGATAATGACTTCCGCCCCCCCGCCCAGCGCCCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAAt < 2:549888/150‑1 (MQ=255) cAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCCGTAAATg > 2:1515931/1‑150 (MQ=255) cAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATg > 2:1136140/1‑150 (MQ=255) aaaaCCGCCGAAATCAACAGCATACCGCGTCCACTACAACGGCGAAAAATTTTATTCCCCAGCGAAAAGAAAATGCCTCCCGCCCCCCCGCCCAGCGACCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATg < 2:2966148/149‑1 (MQ=255) aTCGCCGAAATCAACAGCATATCGCGTGCACTACAACGGCGAAAAAGTTTATTACCCACCGCAAAGATAATGACTCCCGCCACCCCGCCCAGCGCCCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGgcg < 2:3909529/150‑1 (MQ=255) cGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaa < 1:1530993/150‑1 (MQ=255) cGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGGAGCCAGCTGCCTGCCAGTAAATGGCGCTaaa > 2:1710057/1‑150 (MQ=255) gagaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaaa > 1:3112253/1‑150 (MQ=255) gagaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaaa > 2:907190/1‑150 (MQ=255) gagaTCAACAGCATATCGCGGGCCCTACAACGGGGAAAAAGTTTATTACTAAGCGAAAAGATAATGACTCCCCCCCCCCCCCCCAGCGCCCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaaa < 2:1199875/150‑1 (MQ=255) agaTCAACAGCATATCGCGTGCGCTACAACGGCGGAAAAGTTTATTACTCCGCGCAAAGGTAATGACTTCCGCCGCCACGCCCCGCGGCCAAAAAAA‑CCCCACCGCCGAGGCCGAGCAGCCACCCGCCTGCCCGTAAAAGGCGCTtaacc > 2:3789022/1‑148 (MQ=255) agaTCAACAGCATATCGCGTGCACTACAACGGGGAAAAAGTTTATTACCCAGCGAAAAGAAAAGGCCTCCCGCCCCCACGCCCAGCGCCCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAc < 2:3392614/150‑1 (MQ=255) gaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAcc > 1:2046133/1‑150 (MQ=255) gaTCAACAGAATATCGCGTGCCCTAAAACGGCGAAAAATTTTATTCCTCAGCGCAAAGATAATGCCTCCCGCCCCCCCGCCCAGCGACCACAAACC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAcc < 2:431001/150‑1 (MQ=255) ccAGCTTAGCGCGGGCACTCCACGGGGGAAAAAGTTTATTCCTCAGCGCAAATAAATTGACTCCCGCCCCCACCCCCAGCGCCCACAAAAC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt < 2:311777/149‑1 (MQ=255) atatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 2:2195697/1‑150 (MQ=255) atatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 1:542782/1‑150 (MQ=255) atatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 2:428956/1‑150 (MQ=255) tatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCCAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCg > 1:4044535/1‑150 (MQ=255) atCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGc > 1:3511659/1‑150 (MQ=255) cgcgTGCACTACAACGGCGAAAAAGTTTATTCCCCAGCGCAAAGAAAATGACTCCCGCCACCCCGCCCAGCGACCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAt < 2:3674019/150‑1 (MQ=255) gcgTGCACTACAACGGCGAAAAAGTTTATTACCCAGCGCAAAGATAATGACTCCCGCCACCCCGCCCAGCGACCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtg < 2:2314278/150‑1 (MQ=255) cgTGCACTACAACGGCGAAAAATTTTATTACCCAGCGAAAAGATAAGGACTCCCGCCCCCCCGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgt < 2:1496620/150‑1 (MQ=255) gCACTACAACGGCGGAAAAGTTTATTCCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGcc < 1:3711414/150‑1 (MQ=255) gCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGcc > 2:1446025/1‑150 (MQ=255) cACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGccc > 1:1012907/1‑150 (MQ=255) cACTACAACGGCGAAAAATTTTATTCCCCAGCGCAAAGATAATGCCTCCCGCCCCCCCGCCCAGCGACCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGccc < 2:2648354/150‑1 (MQ=255) aCTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGCCTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGcccc < 1:2701774/150‑1 (MQ=255) aCTACAACGGCGGAAAAGGTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGcccc > 1:1877028/1‑150 (MQ=255) ccacacCGGCGGAAAAGTTTATTCCTCGGCAAAAAGATAATCCCTCCCGCCCCCGCGCCGAGGGACCAAAATTC‑CCCAACCGCCGAGGCCGAGTAGCCGGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGccccc < 2:1329052/148‑1 (MQ=255) cTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGccccc > 2:1610060/1‑150 (MQ=255) cTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGccccc > 1:25995/1‑150 (MQ=255) acacCGGCGAAAAATTTTATTACCCAGCGCAAAGATAGTGTCTCCCGCCACCACGCCCAGCGACCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTg < 2:3269158/150‑1 (MQ=255) aCAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTg < 1:3677107/150‑1 (MQ=255) aCGGGGAAAAAGTTTTTTCCCCGGGGCAAAGATAATGCCTCCCGCCACCCCGCCCAGCCACCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCaa < 2:2645759/150‑1 (MQ=255) gcggAAAAGTTTATTACTCAGCGCAAAGATGATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaa > 2:2381673/1‑150 (MQ=255) gcgaAAAATTTTATCACCCAGCCCAAAGATAATGCCTCCCGCCACCACGCCCAGCGACCACAAACC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaa < 2:1371504/150‑1 (MQ=255) cggAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaa > 1:1482974/1‑150 (MQ=255) ggAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaac > 1:3507867/1‑150 (MQ=255) aaaaGTTTATTACTCAGCGAAAAGATAATGACTTCCGCCCCCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaa < 1:536494/150‑1 (MQ=255) aaGGTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGCAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaaac > 2:2621319/1‑150 (MQ=255) gttttATTACTCAGCAAAAAGAAAATGCCTCCCCCCCCCCCGCCCAGCGACCACAAACC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg < 2:2001286/148‑1 (MQ=255) attttATTCCCCAGCAAAAAGAAAATGCCTCCCCCCCCCCCCCCCAGCGCCCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg < 2:163545/148‑1 (MQ=255) attttATTCCCAAGCGCAAAGATAATGACTTCCGCCACCCCCCCCAGCGCCCCCAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg < 1:801949/148‑1 (MQ=255) tttATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCa > 2:581078/1‑150 (MQ=255) ttattaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAg > 2:271882/1‑150 (MQ=255) attaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGc > 2:274319/1‑150 (MQ=255) attaCCCAGGCCAAAAATAACGACTCCCGCACCCCCACCCAGC‑ACCAAAAACACCCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCTGCATGTGCCCCCTGCAATAAACAAACGCAGGc < 2:1268390/150‑1 (MQ=255) ttccTCACCGCAAAGATAATGCCTCCCGCCACCACCCCCAGCGCCCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGcc < 2:1654948/147‑1 (MQ=255) ttaCTCAGCGCAAAGATAATGACTCCCGCCACCGCGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGcc < 1:2125706/150‑1 (MQ=255) ccaccgaaaaGATAATGCCTCCCGCCCCCACGCCCAGCGACCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaa < 2:1708014/143‑1 (MQ=255) gcgcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgc > 1:277419/1‑150 (MQ=255) gcgaAAAGATAATGCCTCCCGCCACCCCGCCCAGCGCCCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgc < 1:2863159/150‑1 (MQ=255) cAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGcc > 1:1776209/1‑150 (MQ=255) cAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGcc > 2:1868108/1‑150 (MQ=255) aaaaGATAATGCTTCCCGCCCCCGCCCCCGGCGACCAAAATCC‑CCCCCCCGCCGAGGCTGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGcc < 2:1913458/149‑1 (MQ=255) aGAAAATGACTCCCGCCCCCACGCCCAGCACCCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGt < 2:3370528/150‑1 (MQ=255) aTAATGATTCCCGCCCCCACCCCCAGCGACCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTc < 2:1276362/150‑1 (MQ=255) tAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt > 1:163414/1‑150 (MQ=255) tAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt > 2:3028277/1‑150 (MQ=255) aaTGACTCCCGCCCCCCCGCCCAGCGCCCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTg < 2:1776209/150‑1 (MQ=255) cTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGaa > 1:3946778/1‑150 (MQ=255) ttCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAAc > 1:1052744/1‑150 (MQ=255) cccccacGCCCAGCGCCCAAAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgcg < 2:59662/147‑1 (MQ=255) caccacGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgcgc > 1:3380031/1‑150 (MQ=255) caccacGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgcgc > 1:3405614/1‑150 (MQ=255) accacGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGcc > 1:41754/1‑150 (MQ=255) ccGCCCAGCGCCCACAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAAc < 2:2814637/149‑1 (MQ=255) gCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCa > 1:2258312/1‑150 (MQ=255) cccAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCAc > 2:4027694/1‑150 (MQ=255) cAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGc > 1:2335733/1‑150 (MQ=255) cGACCACAAATC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGa < 2:1603114/150‑1 (MQ=255) cGACCAAAAATC‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGa < 1:3876157/150‑1 (MQ=255) gACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGAc > 2:294119/1‑150 (MQ=255) gACCAAAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGAc > 2:2391253/1‑150 (MQ=255) ccACAAACC‑CCCCCCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCa < 2:683695/150‑1 (MQ=255) a‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCGGTGc > 2:1186988/1‑150 (MQ=255) | CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATA‑CCCCACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACCGGTGC > AP012306/2212604‑2212902 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |