Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 3,182,861 | 0 | A | C | 25.4% | 284.6 / 23.5 | 114 | L198F (TTA→TTC) | yiaN | predicted transporter |
Reads supporting (aligned to +/- strand): ref base A (72/13); new base C (0/29); total (72/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.50e-17 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 176 total aligned reads displayed.
TTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATG > AP012306/3182713‑3183009 | tattCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTAcc < 1:4025820/150‑1 (MQ=255) attCCCCCTTCCATTCCGTTTATTATTTTCCGCGTTTCCAGCGGATTATTCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTAccc < 1:2338117/150‑1 (MQ=255) ccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGGGATTCCCCTGGCCTTGTG‑ATTGGCGCCACCCTGATGCTTACCTGGTGGGGGGAGGGCCGACG‑CC‑CTAATTTTACccccccg > 2:3009468/1‑149 (MQ=255) cTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCCGGCATGATG‑ATGGGCGCAACGCTGATGCTTTCCTGGTGGGGGGGGGGCAGTCGCCC‑TTAT‑TTTTCcccccccc > 2:1164239/1‑148 (MQ=255) ttCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTTCCCCCGGCACGATT‑TTGGGGGCAAAGCCGATGCCTTCCCGGTGGTGGGGGGCCAGGCG‑CC‑CTTA‑TTTTCCCCCCCCGcc > 2:1681851/1‑149 (MQ=255) tCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCGTTTTCCCTGGCATGATG‑TGGGGTGCGACGCTTTTGCTTATCTTGGGGGGGCGGGCCCGTCG‑CCGTTAA‑TTT‑CCCCGcccacaa > 2:3949817/1‑145 (MQ=255) cATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTTCCCCCGGCATTATG‑ATTGGGGCCACGCCGGTGGTTTCCCTGGGGGGGGAGGGCCGGCG‑CC‑CTAA‑TTTTTCCCGccccccaaa > 2:1801600/1‑143 (MQ=255) aTTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCAATGGACCCGGCATGTTGTGTTGGC‑CAACACAGAGGCTTACCTGGCGGCGGCTGGCGCAACG‑CC‑TCAA‑TTTACCCCTCCAGCgaaaa > 2:138407/1‑150 (MQ=255) cgttttATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTCCCTGGTGGGGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCa < 1:2138447/147‑1 (MQ=255) tattatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCGTTGCCCCCGGCATGATG‑ATGGGGGCAACGCTGATTCTTTCCTGGGGGTGGGGGGCCCGTCG‑CC‑TTTA‑TTTTTTCCCCCCGCAAAAAACAACGAt > 2:2814175/1‑150 (MQ=255) atCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCGTTTCCCCCCGCCTGTTG‑ATGGGGGCAACGCTGATGGTTTCCTTGGGGGGGGGGGGCCGGCG‑CC‑TTTA‑TTTTTCCCCCCCGCAAAAAAAAACGATGcgg > 2:3640442/1‑148 (MQ=255) atCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCCTTTCCCCCGGCCTGATT‑ATTGGGGCAAACCTGATGCTTACCTGGTGGTGGGAGGCCAGTCG‑CC‑CTTA‑TTTATCCCCCCCGCAAAAAACAAAGATGCAg > 2:2377620/1‑150 (MQ=255) atCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTTCCCCCCGCATGTTT‑ATTGGGGCCACCCTGATGCTTACCCGGTGGGGGGAGGCCAGCCG‑CC‑TTAA‑TTTAACCCCCCCGCAAAAAACAAAGATTCat > 2:12708/1‑149 (MQ=255) cTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGa < 1:1347056/150‑1 (MQ=255) tCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCGTTTCCCCTGGCGTTAAT‑ATTGGCGCAACGCTGATGCTTTTCTTGTGGGGGGAGGGCAGTCG‑CC‑TTTA‑TTTAACCCCCCCGCAAAAAACAACGAAGCAGGgaa > 2:3212608/1‑150 (MQ=255) ggCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCGTTTCCCCCGGCATGATG‑ATGGGGGCAACGCTGATGCTTTCCTGGTGGGGGCAGGGCAGGCG‑CC‑CTAA‑TTTTCCCCCCCCGCAAAAAAAAACGAAGCAGGaaaac > 2:3257294/1‑148 (MQ=255) gCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCGGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCt < 1:3527609/150‑1 (MQ=255) gTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCCGGCATGGTG‑ATGGGGGCAACGCTGATGCTTACCTGGGGGGGGCAGGCCAGTCG‑CC‑TTTA‑TTTACCCCGCCCCCCAAAAACAACGATGCCGGAAAACTgg > 2:86898/1‑150 (MQ=255) gCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CT‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCtt < 1:1359876/150‑1 (MQ=255) cGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCGGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CT‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCttt < 2:721999/150‑1 (MQ=255) ggATTATCCATCAGTAAGCTGTTTATGGC‑GGGGCCTGCCCCTGGCCTGGTT‑GAGGGGGCGACACTGCTGCTTTACTCGTGGCGGCGCGGCCGCGC‑CC‑TTAA‑TTTATCCCGCCCGCCAAAAACAACGACGCAAGGAAACTGGGACTCtttt > 2:1505389/1‑150 (MQ=255) ggATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCCGGCCTGATG‑ATGGGGGCAACGCTGATGCTTACCTGGTGGGGGCAGGGCAGGCG‑CC‑TTAA‑TTTACCCCCCCCGCAAAAAACAACGATGCAGGAAAACTGGCACTCtttt > 2:2613000/1‑150 (MQ=255) aTTATCCATCAGTAAGCTGTTTATGGCGGGGGATTG‑CCCTGGCTTGTTT‑TTTGGGGCAACGCTGAGGCTTTCCTGGTGGTGGCAGGCCCGTCG‑CC‑TTTA‑TTTACCCCCCCCGCGAAAACGGAAGAAGCAAGAAATCTCGCGCTCtttttt > 2:269788/1‑148 (MQ=255) aTTATCCATCAGTAAGCTGTTTATGGC‑GGGGATTTCCCCCTGCATGATT‑ATGGGGGCAACGCTGATGCTTTCCTGGTGGGGGGCGGCCCGTCG‑CC‑CTAA‑TTTATCCCCCCCGCCAAAAACAACGATTCAGGGAATCCTGGACTCtttttt > 2:2088125/1‑148 (MQ=255) ttATCCATCAGTAAGCTGTTTATGGC‑GGGCCTTGCCCCCGGCCTGATG‑ATGGGGGCCACGCTGATGCTTTCCTGGTGGGGGGGGGCCAGGCG‑CC‑TTAA‑TTTACCCCCCCCCCCAAAAAAAAAGAGGGCGGAAAACTGGGCCTCttttttt > 2:1040785/1‑147 (MQ=255) tATCCATCAGTAAGCTTTTTATGGC‑GGGCTTTGCCCCTGGCATGATG‑AGGGGCGCACCGCTGATCTTTCCCGGGTGGGGGCAGCCCAGTCG‑CT‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtct < 2:2873370/150‑1 (MQ=255) tATCCATCAGTAAGCTGTTTATGGC‑GGGCCTTTCCCCTCGCCTTTTG‑ATTGGGGCAACACTTATGTTTACCTGGTGGGGGGGGGCCAGTCG‑CC‑TTTA‑TTTTCCCCCCCCGCAAAAAAAAAAGAAGCAGGAAAACTGGCACCCtttttttt > 2:2573554/1‑146 (MQ=255) tATCCATCAGTAAGCTGTTTATGGC‑GGGCATTTCCCCCGGCATGATG‑ATGGGGGCAACGCTGATGCTTTACTGGTGGGGGGGGGGCAGGCG‑CC‑TTAA‑TTTATTCCCCCCGCCAAAAAAAAAGATGCAGGAAATCTGGGCATCtttttttt > 2:668681/1‑146 (MQ=255) cccccAGTAAGTTTTTTATGGC‑GGGCTTTGCCCCTGGCATGAGG‑AGGGGCGCAACGCTGATGCTTACCTGGGGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCg < 2:521719/146‑1 (MQ=255) ccATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCCGGGATGGTG‑GTGGGGGGAACGCTGATGCTTTCCTTGGGGGGGGGGGGCAGGGG‑CC‑TTTA‑TTTACCCCCCCCGCCAAAAACAAAGATGAAGGGAAACTGGGACTCTTTTTTTTccc > 2:3069989/1‑149 (MQ=255) aTCAGTAAGTTTTTTTTGGC‑GGGCATTGCCCCTGGCATGATG‑AGGGGCGCACCGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCG‑CT‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGt < 2:1349180/150‑1 (MQ=255) tAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTTCCTGGGGGGGGGAGGCCCGGCG‑CC‑CTAA‑TTTACCCCCCCCGCAAAAAAAAACGATGCAGGAAATCTGGCACTCTTTTTTTTCCGGGATCtt > 2:3183448/1‑149 (MQ=255) aGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTggg < 1:1157386/150‑1 (MQ=255) cTGTTTATGGC‑GGGCATTTCCCCCGGCATGATG‑TTGGGGGCAACGCTGATGCTTTCCTGGTGGGGGGAGGGCCGGCG‑CC‑CTAA‑TTTACCCCCCCCGCAAAAAAAAACGATGCAGGAAATCTGGCACTCTTTTTTCTCCGGGATCTGGgcg > 2:2783388/1‑150 (MQ=255) tGTTTATGGC‑GGGCATTGCCCCCGGCCTGATG‑ATGGGGGCAACGCTGATGCTTTCCTGGTGGGGGGAGGGCAGGCG‑CC‑TTAA‑TTTTACCCCCCAGCAAAAAACAACGATGCAGGAAAACTGGGACTCTTTTTTTTCCCGTATCTGGgcgc > 2:3318170/1‑150 (MQ=255) gTTTATGGT‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCt > 2:2221665/1‑150 (MQ=255) ttgggC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTCCTTGGTGGGGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGtt < 2:3563595/147‑1 (MQ=255) tGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttc > 2:2611456/1‑150 (MQ=255) gggCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTcc > 1:1384066/1‑150 (MQ=255) cATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGt > 2:3438784/1‑150 (MQ=255) cATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGt > 1:3135642/1‑150 (MQ=255) aTTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGtc > 2:2804243/1‑150 (MQ=255) ttGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGtca > 2:2393330/1‑150 (MQ=255) gCCCCTGGCATGATG‑ATGGGCCCACCGCTGATGCTTCCCTGGTGGTGGCGGGCCAGTCG‑CT‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGtcatc < 2:3490761/150‑1 (MQ=255) ccTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCatt > 1:3485459/1‑150 (MQ=255) ccTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCatt > 2:1600480/1‑150 (MQ=255) tGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCattat > 1:142903/1‑150 (MQ=255) tGGCATGATG‑ATGCGCGCAACTCTGATGCTTCCCTGTTGGTGGCCGGCCAGTCG‑CT‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCattat < 2:2242643/150‑1 (MQ=255) ggCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCattatt > 1:1463208/1‑150 (MQ=255) gCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTg > 2:2281093/1‑150 (MQ=255) tgatg‑atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCg > 2:2539611/1‑150 (MQ=255) gatg‑atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCgg > 2:1237017/1‑150 (MQ=255) gatg‑aggGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCgg < 1:255344/150‑1 (MQ=255) atg‑atgGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCggg < 1:811169/150‑1 (MQ=255) atg‑atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCggg < 1:348026/150‑1 (MQ=255) tg‑atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCgggg > 1:1967748/1‑149 (MQ=255) ggggCGCACCGTTGGTGCTTACCTGGTGGTGGCGGCCCAGTCG‑CT‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTc < 2:1904480/149‑1 (MQ=255) ggggCGCAACGCTGATGCTTACCGGGGGGGGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTc < 2:696613/149‑1 (MQ=255) ggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGtcttcc > 2:3912973/1‑145 (MQ=255) cgcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGccc > 1:2495295/1‑148 (MQ=255) gcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CT‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTcc < 1:1213037/150‑1 (MQ=255) cAACGTTGATGTTTACTGGGTGGTGGCAGGCCAGTGG‑CT‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCg < 2:2994019/150‑1 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTccc > 1:3185847/1‑149 (MQ=255) gCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCt < 1:3179707/150‑1 (MQ=255) gCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCCGCCt > 2:2958366/1‑150 (MQ=255) tGATGCTTCCGTGGGGGTGGCAGGCCAGTCG‑CC‑TTAT‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑t < 2:3948189/150‑1 (MQ=255) tGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCCGCCCG‑t > 2:3631259/1‑150 (MQ=255) tGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTCCTTCCGCCTG‑t > 1:1018287/1‑150 (MQ=255) tGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTcccggccgt > 2:2229219/1‑143 (MQ=255) tGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGcccgg > 2:2178742/1‑147 (MQ=255) tGCTTCCCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTa < 1:2680617/150‑1 (MQ=255) ccTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTCGCGCCGGCCTC‑tttttcccca > 1:170527/1‑143 (MQ=255) gggggggtggCAGCCCAGTCG‑CC‑TTAT‑TTCCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTAc < 2:2918221/145‑1 (MQ=255) ggtggtggCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCGGCCCG‑TTTATCCCTAccc > 1:3728536/1‑149 (MQ=255) gggggCAGGCCGGTGG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAg < 1:1602357/147‑1 (MQ=255) cAGGCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCggg < 2:3824921/150‑1 (MQ=255) ggCCAGTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGc < 1:2733088/150‑1 (MQ=255) ggCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCCG‑TTTTTCCCCCCCCCAGCCGGGGc > 2:1865641/1‑150 (MQ=255) ccAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCCG‑TTTTTCCCTCCCCAAACCCGGGGCg > 2:944710/1‑150 (MQ=255) ccAGTCG‑CA‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCGGCCTG‑GTTTCCCCTCCCGAAGCCCGGGCCg > 2:3429833/1‑150 (MQ=255) gccG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtg < 1:3516177/148‑1 (MQ=255) gTCG‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtg < 1:2628362/150‑1 (MQ=255) gTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCTCTCCCGCCCG‑TTTTCCCCCACCCCAGCCCGGGCCGGtg > 1:389644/1‑150 (MQ=255) gTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtg < 1:519642/150‑1 (MQ=255) gtccctttAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtg < 2:3154707/144‑1 (MQ=255) cG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCCGCCCG‑TTTTCCCCCACCCCAGCCGGGGCCgctgct > 1:576260/1‑150 (MQ=255) cG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtgct < 1:2804243/150‑1 (MQ=255) g‑CC‑TTAA‑TTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTtgctg < 1:1229249/150‑1 (MQ=255) g‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGGCTGTTTTACCCCACCCCAACCCGGGGcgctggtg > 1:3231672/1‑143 (MQ=255) g‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCTG‑TTTACCCCCACCCAAGCCGGGGCCGGtgctg > 1:3367114/1‑150 (MQ=255) cc‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCCGCCTG‑TTTACCCCCCCCCAAGCCGGGGCCGTtgctgc > 1:2775161/1‑150 (MQ=255) c‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGGTCCCGGCCG‑TTTTTCCCTACCCGAGCCGGGGCCGGtgctgcc > 1:13708/1‑149 (MQ=255) ttAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCGCCGGCCTG‑CTTTCCCCTCCCGAACCCCGGGGCGCTGCTGCtt > 1:750441/1‑150 (MQ=255) tAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTCTCCCGCCGG‑TTTTCCCCTCCCAAAACCCGGGGCGTTGCTGCttt > 1:1851121/1‑150 (MQ=255) tAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCCG‑TTTTCCCCCACCCCAGCCGGGGGCGCTGCTGCttt > 1:963489/1‑150 (MQ=255) attttCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTc < 1:518473/148‑1 (MQ=255) tttACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTTCCGCCCG‑TTTTTCCCCCCCCAAACCCGGGGCGGTGCTGCtttttt > 2:1522763/1‑147 (MQ=255) ttACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCGGCCTG‑TTTTTCCCCACCCAAACCGGGGGCGGTGCTTCttttttt > 2:505231/1‑146 (MQ=255) tACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCCCCGGCCCG‑TTTTAACCCACCCCACCCGGGGGCGTTGCTGCgttttttg > 1:2926442/1‑145 (MQ=255) tACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTCCCCCGCCCG‑TTTTCCCCCCCCCCAACCCGGGCCCCTGCTGCtttttttt > 1:3727587/1‑145 (MQ=255) | TTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGC‑GGGCATTGCCCCTGGCATGATG‑ATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCG‑CC‑TTAA‑TTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTG‑TTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATG > AP012306/3182713‑3183009 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |