| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | 3109422 = | 213 (0.660) | 6 (0.020) | 6/288 | 13.7 | 2.8% | coding (924/1650 nt) | treF | cytoplasmic trehalase |
| ? | AP012306 | 3109458 = | 212 (0.680) | coding (960/1650 nt) | treF | cytoplasmic trehalase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/3109574‑3109422‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAA > AP012306/3109458‑3109605 TCCAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCGCGCAGCCATCGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGC < 2:28158/150‑1TCCAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGC < 2:2884011/150‑1 CCAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCG > 1:1304939/1‑150 CAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGG < 1:1087890/150‑1 CAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGG > 1:2327237/1‑150 CAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGG < 2:2110117/150‑1 AGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGG < 2:225464/150‑1 GAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCG > 1:15370/1‑150 TTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCGGTTGGGA > 1:3987254/1‑150 GATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTT > 1:1091891/1‑150 TGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCG < 2:15370/150‑1 GTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGA < 2:3987254/150‑1 GGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATA < 2:1091891/150‑1 GCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTG < 2:728096/150‑1 GCGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTG < 1:1785846/150‑1 CGGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGA < 1:695110/150‑1 GGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAA > 1:3310767/1‑150 GGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAA < 1:2905616/150‑1 GGGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAA > 2:513869/1‑150 GGGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAA > 1:424947/1‑150 TCCAGTTTAAACAGGAAGGCATTCAGATCGATGGGGATGAACTGGGTGGTACGAATGCTCGCCAGACGACCAGTATCACGCAGCCAACGGGAAGAGTAATCCCAACCGGAGGCCGCCCCCGCGCGTAAATCGCGGTACACCTCGTTGGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/3109574‑3109422‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggGGCGGCCTCCGGTTGGGATTACTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGATCTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAA > AP012306/3109458‑3109605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |