Predicted mutation
evidence seq id position mutation annotation gene description
RA AP012306 3,716,601 T→C intergenic (‑17/‑376) acs ← / → nrfA bifunctional acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AP0123063,716,6010TC75.7% 753.2 / 268.1 354intergenic (‑17/‑376)acs/nrfAbifunctional acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome
Reads supporting (aligned to +/- strand):  ref base T (37/49);  new base C (123/145);  total (160/194)
Fisher's exact test for biased strand distribution p-value = 7.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.38e-01

Only 100 of 360 total aligned reads displayed.

TTTCCCTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTC  >  AP012306/3716454‑3716750
                                                                                                                                                   |                                                                                                                                                     
tttCCCTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAg                                                                                                                                                     >  2:451052/1‑150 (MQ=255)
  tCCCTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGa                                                                                                                                                   <  2:3102777/150‑1 (MQ=255)
   cccTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGAt                                                                                                                                                  <  2:644105/150‑1 (MQ=255)
   cccTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGAt                                                                                                                                                  >  2:1112912/1‑150 (MQ=255)
   cccTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGAt                                                                                                                                                  <  1:1748021/150‑1 (MQ=255)
   cccTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGAt                                                                                                                                                  >  1:4168157/1‑150 (MQ=255)
     cTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGt                                                                                                                                                <  1:3216684/150‑1 (MQ=255)
      tGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGtt                                                                                                                                               <  2:3365291/150‑1 (MQ=255)
           gCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTtaataa                                                                                                                                          <  2:3868123/150‑1 (MQ=255)
             ccgaGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAataata                                                                                                                                        <  1:337113/147‑1 (MQ=255)
             cccAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAataata                                                                                                                                        >  1:3521162/1‑150 (MQ=255)
              ccAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAatat                                                                                                                                       <  1:3472677/150‑1 (MQ=255)
               cAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATAtg                                                                                                                                      >  1:905538/1‑150 (MQ=255)
               cAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATAtg                                                                                                                                      >  2:849229/1‑150 (MQ=255)
                aGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATAtgt                                                                                                                                     <  1:1388158/150‑1 (MQ=255)
                  aaGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTgg                                                                                                                                   <  1:6518/150‑1 (MQ=255)
                  aaGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTgg                                                                                                                                   <  1:1921323/150‑1 (MQ=255)
                      tATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATa                                                                                                                               <  1:4323447/150‑1 (MQ=255)
                          aGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCg                                                                                                                           >  2:3268617/1‑150 (MQ=255)
                          aGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGGGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCg                                                                                                                           >  1:3015654/1‑150 (MQ=255)
                           ggTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGt                                                                                                                          >  2:403973/1‑150 (MQ=255)
                            gTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGtt                                                                                                                         <  2:4244005/150‑1 (MQ=255)
                             tACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTa                                                                                                                        <  2:1613485/150‑1 (MQ=255)
                                 ttAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATg                                                                                                                    >  1:2949582/1‑150 (MQ=255)
                                  tAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGt                                                                                                                   >  1:2610625/1‑150 (MQ=255)
                                    aTAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAg                                                                                                                 <  2:3404679/150‑1 (MQ=255)
                                      aGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAggg                                                                                                               >  2:2431739/1‑150 (MQ=255)
                                       gATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAgggg                                                                                                              <  2:2698121/150‑1 (MQ=255)
                                        aTTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGt                                                                                                             >  1:70712/1‑150 (MQ=255)
                                         ttgttgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTa                                                                                                            <  1:156235/150‑1 (MQ=255)
                                          tgttgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTAt                                                                                                           >  1:4095071/1‑150 (MQ=255)
                                                 aCATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGt                                                                                                    >  1:210724/1‑150 (MQ=255)
                                                 aCATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGt                                                                                                    <  2:4167484/150‑1 (MQ=255)
                                                  cATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGtt                                                                                                   >  2:3782013/1‑150 (MQ=255)
                                                   aTCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGttt                                                                                                  >  1:2541352/1‑150 (MQ=255)
                                                   aTCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGttt                                                                                                  >  1:2091043/1‑150 (MQ=255)
                                                    tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGtttt                                                                                                 <  1:3169977/150‑1 (MQ=255)
                                                    tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGtttt                                                                                                 <  2:3035118/150‑1 (MQ=255)
                                                     cGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTg                                                                                                <  2:3428403/150‑1 (MQ=255)
                                                      gCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGt                                                                                               <  1:1047123/150‑1 (MQ=255)
                                                       ccTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGCTAATAATATGTGGCATAAGCGTTAAATGTAGGGGCATTGGCAGTTTTgct                                                                                              >  1:2015823/1‑148 (MQ=255)
                                                        cTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGttt                                                                                             >  1:3675556/1‑150 (MQ=255)
                                                         tCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTa                                                                                            <  2:4111192/150‑1 (MQ=255)
                                                          cGTACTGCTGCGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAg                                                                                           <  1:3126543/150‑1 (MQ=255)
                                                               tgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                      <  1:2733288/150‑1 (MQ=255)
                                                               tgctgAGGGTTTATCAGGCAACGGTCTGCGATGGTGGCAGGAATGGTGTGGTTGTGAATTTGGCTCATGGTTTTGTTCTCCTTGCAGGATGTTAATAATATATGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                      <  2:3620989/150‑1 (MQ=255)
                                                                gctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTg                                                                                     >  1:3969128/1‑150 (MQ=255)
                                                                  tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTtgg                                                                                   >  2:588846/1‑150 (MQ=255)
                                                                  tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTggg                                                                                   <  2:3150778/150‑1 (MQ=255)
                                                                  tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTggg                                                                                   >  2:2485893/1‑150 (MQ=255)
                                                                      ggTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGAc                                                                               <  1:2164316/150‑1 (MQ=255)
                                                                       gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                              <  1:2520978/150‑1 (MQ=255)
                                                                         ttATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGa                                                                            <  1:2462710/150‑1 (MQ=255)
                                                                         ttATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGa                                                                            <  1:2967148/150‑1 (MQ=255)
                                                                          tATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGAt                                                                           >  1:3906866/1‑150 (MQ=255)
                                                                          tATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGAt                                                                           <  1:2225436/150‑1 (MQ=255)
                                                                             cAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCAc                                                                        <  2:435914/150‑1 (MQ=255)
                                                                                gCAACGGTCCGGGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCGCCTTGCAGGATGTTAATAATATGTGGCATAAGCGGTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCa                                                                     <  2:1193197/150‑1 (MQ=255)
                                                                                   aCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaaaa                                                                  <  2:3712090/150‑1 (MQ=255)
                                                                                           cGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAtt                                                          <  1:1276532/150‑1 (MQ=255)
                                                                                           cGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAtt                                                          >  1:2664694/1‑150 (MQ=255)
                                                                                              tGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGGTCACGCAAAAGGAGAAGtggg                                                       >  2:1324378/1‑148 (MQ=255)
                                                                                              tGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                       <  1:530252/150‑1 (MQ=255)
                                                                                                    cAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATa                                                 <  1:3807392/150‑1 (MQ=255)
                                                                                                     aGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAGGTAGAATTGTGCAAATaa                                                <  2:2913223/150‑1 (MQ=255)
                                                                                                     aGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                >  1:841425/1‑150 (MQ=255)
                                                                                                     aGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                >  1:1400260/1‑150 (MQ=255)
                                                                                                       gAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAAc                                              >  2:2254569/1‑150 (MQ=255)
                                                                                                            gtgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                         <  2:1245603/150‑1 (MQ=255)
                                                                                                             tgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAgg                                        <  2:1458134/150‑1 (MQ=255)
                                                                                                              gtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAggg                                       >  1:1482754/1‑150 (MQ=255)
                                                                                                               tgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGt                                      <  1:2355323/150‑1 (MQ=255)
                                                                                                                gtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAgggga                                     >  2:1161057/1‑148 (MQ=255)
                                                                                                                 tttGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTaa                                    <  1:1793926/150‑1 (MQ=255)
                                                                                                                 tttGTGAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTaa                                    >  2:2772522/1‑150 (MQ=255)
                                                                                                                  ttGTGAATTTGGCTCATGCTTTTGTTCTCCTCGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAt                                   <  2:1660159/150‑1 (MQ=255)
                                                                                                                    gtgAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTGTTTTGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAttt                                 >  2:2243022/1‑150 (MQ=255)
                                                                                                                      gAATTTGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAttttt                               <  2:1013844/150‑1 (MQ=255)
                                                                                                                           tGGCTCATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAgg                          >  2:1955841/1‑150 (MQ=255)
                                                                                                                              cTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGGAATTTTTGAAGGTCa                       >  2:1421797/1‑150 (MQ=255)
                                                                                                                                cATGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGc                     <  2:2057483/150‑1 (MQ=255)
                                                                                                                                 aTGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGca                    <  1:1974854/150‑1 (MQ=255)
                                                                                                                                 aTGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGGAATTTTTGAAGGTCAGca                    >  2:2291217/1‑150 (MQ=255)
                                                                                                                                  tGCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                   <  1:3641481/150‑1 (MQ=255)
                                                                                                                                   gCTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACAGCAGGGTAATTTTTGAAGGTCAGcaac                  <  1:3050767/150‑1 (MQ=255)
                                                                                                                                    cTTTTGTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaaca                 <  2:3552/150‑1 (MQ=255)
                                                                                                                                        tGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAg             <  1:3253868/150‑1 (MQ=255)
                                                                                                                                        tGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAg             <  1:3307946/150‑1 (MQ=255)
                                                                                                                                         gTTCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGt            <  2:763722/150‑1 (MQ=255)
                                                                                                                                          ttCTCCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAACAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGtt           <  1:1136704/150‑1 (MQ=255)
                                                                                                                                           tctcCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg          <  1:441964/150‑1 (MQ=255)
                                                                                                                                           tctcCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg          <  1:2768217/150‑1 (MQ=255)
                                                                                                                                             tcCTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGAt        >  2:2963945/1‑150 (MQ=255)
                                                                                                                                              ccTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGAtt       <  2:3891026/150‑1 (MQ=255)
                                                                                                                                               cTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTa      >  2:142504/1‑150 (MQ=255)
                                                                                                                                               cTTGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTa      <  1:1071445/150‑1 (MQ=255)
                                                                                                                                               cTTGCAGGATCTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTa      <  1:4262361/150‑1 (MQ=255)
                                                                                                                                                ttGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTaa     <  1:1700902/150‑1 (MQ=255)
                                                                                                                                                ttGCAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTaa     <  1:1611882/150‑1 (MQ=255)
                                                                                                                                                 tGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAAt    <  2:523500/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
TTTCCCTGTTCGCCCCAGAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTC  >  AP012306/3716454‑3716750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: