New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP012306	= 3600650	NA (NA)	40 (0.130) +AAAGG	9/288	20.1	NA	noncoding (2797/2904 nt)	rrlB	23S ribosomal RNA (rrlB)
	?	AP012306	= 3642048	NA (NA)					noncoding (2793/2904 nt)	rrlE	23S ribosomal RNA (rrlE)
Rejected: Coverage evenness skew score above cutoff.

GGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCG  >  AP012306/3600516‑3600695                                                                                                                                       |                                              ggtccGGCGTGGTCGCATGACTGGTGTCCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAGGCATCTAAGCGCGAAACTTGCGCCGAGATGAGTTCTACCTGACCCTTTAAGGGTCCTGAAgg                                <  2:2781344/147‑1 (MQ=1)                               ggatGTCATGCCAATGGCACTGCCCGATAGCTAAATGCGGAAAAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATAAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCg  >  2:3509084/4‑150 (MQ=0)                                                                                                                                       |                                              GGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCG  >  AP012306/3600516‑3600695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.