New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP012306 1080383 =269 (0.830)9 (0.030)
+ATCCACACCAAGCCGGAATTA		 8/256 14.3 3.2% coding (1031/1254 nt) ychP predicted invasin
?AP012306 = 3139166 369 (1.140)intergenic (‑172/‑304) ldrD/yhjV toxic polypeptide, small/predicted transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGACACGCTGCCCCTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/1080530‑1080383
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTG  <  AP012306/3139166‑3139114
                                                                                                                                                    |||||||||||||||||||||                                                     
GAGACACGCTGCCCCTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGAT                                                                          <  1:549776/150‑1
  GACACGCTGCCCCTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCC                                                                        >  2:4227255/1‑150
             CCTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCG                                                             >  1:2612333/1‑150
              CTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGG                                                            >  1:4285139/1‑150
                             CACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGG                                             >  2:2522749/1‑150
                                                   TTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCAGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTAT                       <  1:1037280/150‑1
                                                        TGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTG                  <  2:2439754/150‑1
                                                             CTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGC             >  1:969763/1‑150
                                                              TTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCA            >  2:4165861/1‑150
                                                                 CCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTG         >  1:4167688/1‑150
                                                                 CCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTG         >  2:699819/1‑150
                                                                     TTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTG     <  1:99169/150‑1
                                                                        TGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGATCCACACCAAGCCGGAATTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTG  >  1:2940841/1‑150
                                                                                                                                                    |||||||||||||||||||||                                                     
GAGACACGCTGCCCCTGGTTATCTTCCACCACCACAGACAATCGCCAGTGATTGCTTGCCCCTTCCCCGTTCTGCCAGTCAGGCATGATCAGCGTCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/1080530‑1080383
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTG  <  AP012306/3139166‑3139114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.